Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_031282.1 Length=12651 Score E Sequences producing significant alignments: (Bits) Value seq121975 178 1e-40 seq34844 138 9e-29 >seq121975 Length=4353 Score = 178 bits (196), Expect = 1e-40 Identities = 281/400 (70%), Gaps = 2/400 (1%) Strand=Plus/Plus Query 7723 GGATTAGATCTGGAATATTTAATCATTGGATTAAAGGAGAAAGAGCGAGAAATCAAGAAA 7782 |||||||| || | | | || || ||||||| | ||||| |||||||| || | Sbjct 277 GGATTAGACTTGAATTCACTGATAATAGGATTAAGAGCAAAAGAACGAGAAATGAAAATT 336 Query 7783 GACGGGAGATTCTTCTCTCTTATGTCGTGGCA-ACTCAGGGATTACTTTGTAATAACCGA 7841 | || |||| ||| || | ||||| ||| | ||| || ||||||||| ||| ||| Sbjct 337 GCTGGTAGATATTTCGCTTTAATGTCCTGGGAGACT-AGATGTTACTTTGTCTTAATCGA 395 Query 7842 ATATTTGATCAAGCAACACTTTGTCCCATTATTCGACGGTTTGACTATGGCAGATGATCT 7901 || |||||||| ||||| | ||| ||| |||| | || || || |||||||| ||| | Sbjct 396 GTACTTGATCAAACAACATTATGTACCACTATTTAAGGGATTAACCATGGCAGACGATTT 455 Query 7902 CACGACTGTTATCAAGAAAATGATGGACAACGCAAATGGTCAAGGATTAGATACCTATGA 7961 | || | | ||||| |||||||| | | | |||||||| |||| | || || Sbjct 456 AAATACATTAACAAAGAAGATGATGGAAACTTCTATGGGTCAAGGTATAGACAATTACGA 515 Query 7962 TTATATATCCATAGCCAATCATATAGATTATGAAAAGTGGAATAATCATCAGAGGAAAGA 8021 || || | ||||| |||||| ||||||| || |||||||| ||||||| ||||| Sbjct 516 CTACATTTGTATAGCAAATCATTTAGATTACTCGAAATGGAATAACAATCAGAGAAAAGA 575 Query 8022 ATCCACTACCCCAGTATTTAAGGTAATGGGTCAATTCCTAGGTTACCCTAACCTTATTAG 8081 | ||| || || ||||| || || ||||| ||||| || ||| | || | ||| Sbjct 576 AGCCAATAATCCTGTATTCAAAGTGATGGGACAATTTCTTGGTGCCGAGAATTTATTTAC 635 Query 8082 CCGAACTCACGAATTCTTCGAAAGGAGTTTAATTTACCAT 8121 |||| || ||| |||| || ||||||||||| ||| || Sbjct 636 AAGAACGCATGAAATCTTTGAGAGGAGTTTAATCTACTAT 675 >seq34844 Length=5462 Score = 138 bits (152), Expect = 9e-29 Identities = 379/569 (67%), Gaps = 14/569 (2%) Strand=Plus/Minus Query 7972 ATAGCCAATCATATAGATTATGAAAAGTGGAATAATCATCAGAGGAAAGAATCCACTACC 8031 ||||| || || | |||||| |||||||||||| |||||||||||||| | | | | Sbjct 4571 ATAGCTAACCACTTGGATTATTCTAAGTGGAATAATAATCAGAGGAAAGAAGCAAACAAC 4512 Query 8032 CCAGTATTTAAGGTAATGGGTCAATTCCTAGGTTACCCTAACCTTATTAGCCGAACTCAC 8091 ||||| || || || ||||| ||||| | || || || | ||| ||||||| Sbjct 4511 CCAGTTTTCAAAGTCATGGGACAATTTATGGGAGCACCCAATTTGTTTACGAGAACTCAT 4452 Query 8092 GAATTCTTCGAAAGGAGTTTAATTTACCATGGCGGGAGAACAGACCTAATGA-GGATCGT 8150 || | ||||||| ||||||||||| || | || || |||||| | ||| Sbjct 4451 GAGATTTTCGAAAATAGTTTAATTTATTATCCTGCTAGGGGTGATTTAATGACAGTACGT 4392 Query 8151 CAATGGTGAAGTAGAAAATAATTCGGATATCCGAGTATGTTGGAATGGACAGAAAGGAGG 8210 || | |||| | |||||||| || | ||||| || ||| | || |||| ||||| Sbjct 4391 -AACAATCAAGTTGTCAATAATTCAGACCTGCGAGTTTGCTGGCAGGGTCAGAGTGGAGG 4333 Query 8211 TCTGGAAGGATTGAGACAGAAAGGTTGGAGCATTCTAAACCTTCTACTGATTAAAAGAGA 8270 |||||||| | ||||| || |||||| || || | || || || ||||| Sbjct 4332 AATGGAAGGACTAAGACAAAAGGGTTGGTCAATCGTAGGGTTACTTTCCATCAACAGAGA 4273 Query 8271 AGGGTCATCCAGAAACACATCTATCAAAACT-TTAGCTCAAGGGGATAATCAAGTCATCT 8329 | | | ||||||||| || |||| | |||||||| || || || ||||| || | Sbjct 4272 AATATTACAACGAAACACAT-TAGTAAAAGTATTAGCTCAGGGAGACAACCAAGTAATAT 4214 Query 8330 GCACCCAGTATCGTCTACA--GAAATACAGAACACA-AGAAGAAATGGTCGAAAGAATCC 8386 ||||| |||| |||| || | || | | || |||| ||| ||| Sbjct 4213 GCACCATGTATAAGATACAATCCTATTCTGATGATAGCGAGTTAATG---AAAAACATCG 4157 Query 8387 AAAAAATTGTTCAAAATAATCAAGCAATCATATCAAATATTGAAAACGGTACCAGGAGA- 8445 |||| || | |||||||| |||| ||||| | |||||||| || | ||| | | Sbjct 4156 AAAATATAATAAAAAATAATGAAGCTATCATGAAAGCTATTGAAAGAGG-AGCAGAAAAA 4098 Query 8446 -TTGGGCTTAATAATCAACAAAGACGAAACAATGCAGTCAGCAGACTTTTTGAGTTATGG 8504 ||||| || ||| || |||| |||||||| || || || | | | | ||| || Sbjct 4097 CTTGGG-TTGGAAATAAATGAAGATGAAACAATTCAAAGTGCCGATTATCTTAATTACGG 4039 Query 8505 TAAAGTTCCCGTATTCAGAGGAACCATTC 8533 |||||||||| || | || |||| ||||| Sbjct 4038 TAAAGTTCCCATAATTAGGGGAAACATTC 4010 Score = 105 bits (116), Expect = 5e-19 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 9805 GGAGAAGATTGGGATAATTTAAC--CAAGGGATTTAAAAGAACAGGGTCTGCCCTTCATC 9862 |||||||||||| ||| | || |||| ||| ||||| ||||| || | |||| Sbjct 2693 GGAGAAGATTGGTCTAAGTCAATTTCAAGC--TTTTCCAGAACCGGGTCAGCATTACATC 2636 Query 9863 GTTTTAGTTGTTCTAGGCAAAGTACCGGTGGATTCGCTGCACAAAGTCCTGCAAAATTAA 9922 | ||| |||||||| ||||| || ||||||| ||||| |||||||| | |||||||| Sbjct 2635 GCTTTTCATGTTCTAGACAAAGCACAGGTGGATATGCTGCTCAAAGTCCAGTAAAATTAA 2576 Query 9923 CTCGCATCATGACCACAACCAGTACACTTCAGGAATTGGGTGATGTCAACTATGATTTCA 9982 | | || || | ||||| |||||| | ||||| ||| || |||||||||| Sbjct 2575 CCAGAATGATATCAACAACGGATACACTAGACGAATTAAATGAGAAGAATTATGATTTCA 2516 Query 9983 TGTTTCAATCGTGTATATTATACGCACAAATGAC 10016 |||||||| | | || |||| | ||||| || Sbjct 2515 TGTTTCAAACACTTTTAATATATTCTCAAATAAC 2482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40272032497620