Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_031691.1 Length=11238 Score E Sequences producing significant alignments: (Bits) Value seq121975 141 7e-30 seq34844 78.8 7e-11 >seq121975 Length=4353 Score = 141 bits (156), Expect = 7e-30 Identities = 249/360 (69%), Gaps = 2/360 (1%) Strand=Plus/Minus Query 4457 TAATAAATCAGACTCTGTTCAAAGAATTCATGGGTTCTAGATATTAAGTTGGGGTATCCC 4516 || || || | |||| ||||||| |||||| ||||| | | ||| || | || Sbjct 674 TAGTAGATTAAACTCCTCTCAAAGATTTCATGCGTTCTTGTAAATAAATTCTCGGCACCA 615 Query 4517 AAAAATTGTCCCATTACCTTGAATGTGGGATTATTGGCTGCTCCCCTCTGATGATTGTTC 4576 | |||||||||||| || |||||| |||||||||||| || ||||||| || ||| Sbjct 614 AGAAATTGTCCCATCACTTTGAATACAGGATTATTGGCTTCTTTTCTCTGATTGTTATTC 555 Query 4577 CATTTTTCATAATCTACATGGTTGGCAAAGCTTACATGATCATAATTATCCGTACCTTGA 4636 ||||| ||||||| ||| || || | | | | || ||||| || |||||||| Sbjct 554 CATTTCGAGTAATCTAAATGATTTGCTATACAAATGTAGTCGTAATTGTCTATACCTTGA 495 Query 4637 -CCATATGTGTTGTCCATTAATTTTTTAGTCAAAACGGTGGAGTTATCTGCCATGGTTAG 4695 ||||| ||| ||||| | || || || || | | | ||||||||||||| Sbjct 494 CCCATAGAAGTT-TCCATCATCTTCTTTGTTAATGTATTTAAATCGTCTGCCATGGTTAA 436 Query 4696 ACCTTTAAATAATGGGACAAAATGCTTCTTGATCAGATATTCTGTTATTACGAAGTATTC 4755 || ||||||| ||| ||| |||| | ||||||| || || ||| || ||||| Sbjct 435 TCCCTTAAATAGTGGTACATAATGTTGTTTGATCAAGTACTCGATTAAGACAAAGTAACA 376 Query 4756 TCTCAACTCCCAGGACATGAGCGCAAAAAATCTTCCTTTTATTTTCAGTTCACGCTCTTT 4815 ||| |||||||||||| | || ||| |||| || ||||||| ||| || ||||| Sbjct 375 TCTAGTCTCCCAGGACATTAAAGCGAAATATCTACCAGCAATTTTCATTTCTCGTTCTTT 316 Score = 102 bits (112), Expect = 6e-18 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 2544 CATGTATCTCACCAGCGGTAATTTGAGAGTAAATAAGTAAACTCTGATACATGAAGTCAT 2603 |||||| || |||| ||||||||||| || || || ||| |||| |||||||||||| Sbjct 2647 CATGTAATTCCCCAGTTGTAATTTGAGATTAGATTAGCAAAGTCTGGAACATGAAGTCAT 2588 Query 2604 AATTCCGCTGGTTGTACTCCGAGAGGGTATCAGTAGTAGCACACATCCTAGTAAGCTTAA 2663 |||| | || | || | ||||| || |||| | ||| || || || || | Sbjct 2587 AATTTTTATCATTCAATTCTTCTAAAGTATCGGTGGTAGAAATCATTCTCGTTAGTTTTA 2528 Query 2664 CTGGAGACTGACCTGAAAATCCTCCCGAACTTTGGCGGGAACATGAAAACCTATGAGGAG 2723 | ||| ||| ||| | ||||||| | ||||| || |||||||| || ||||| | | Sbjct 2527 CAGGACTTTGAGCTGCATATCCTCCTGCGCTTTGTCGAGAACATGAGAATCTATGTAGGG 2468 Query 2724 CTGATCCAGTTCTT 2737 |||| ||||||||| Sbjct 2467 CTGAACCAGTTCTT 2454 >seq34844 Length=5462 Score = 78.8 bits (86), Expect = 7e-11 Identities = 105/146 (72%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 4457 TAATAAATCAGACTCTGTTCAAAGAATTCATGGGTTCTAGATATTAAGTTGGGGTATCCC 4516 |||||||| | ||| | ||| || | ||||| ||||| | | || ||||| |||| Sbjct 4423 TAATAAATTAAACTATTTTCGAAAATCTCATGAGTTCTCGTAAACAAATTGGGTGCTCCC 4482 Query 4517 AAAAATTGTCCCATTACCTTGAATGTGGGATTATTGGCTGCTCCCCTCTGATGATTGTTC 4576 | |||||||||||| || ||||| || || || ||| || |||||||| ||| ||| Sbjct 4483 ATAAATTGTCCCATGACTTTGAAAACTGGGTTGTTTGCTTCTTTCCTCTGATTATTATTC 4542 Query 4577 CATTTTTCATAATCTACATGGTTGGC 4602 || || |||||| | ||||| || Sbjct 4543 CACTTAGAATAATCCAAGTGGTTAGC 4568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35761181770776