Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_025384.1 Length=11190 Score E Sequences producing significant alignments: (Bits) Value seq2918 423 1e-114 >seq2918 Length=549226 Score = 423 bits (468), Expect = 1e-114 Identities = 745/1072 (69%), Gaps = 25/1072 (2%) Strand=Plus/Plus Query 425 ATCGCCTCTCTCTACAAGTTCCAAGCAGTGGGAGATGCCTTGGACCTGTCAGGAGGAGCA 484 ||||| || || ||| ||| | ||||||| || || | | | | ||||| | Sbjct 199779 ATCGCGTCCCTGTACCGGTTTGATCCAGTGGGGGACCCCGTCACCATCACTGGAGGTACC 199838 Query 485 GTCCAAGGTGATCGGCTCTACAACCTGTTTATGCTGTTTGCCCCATGTCGCCTACACTCA 544 | ||||| |||||||| | || ||||| ||| ||||||| |||||||| || ||||| Sbjct 199839 GGTCAAGGAGATCGGCTATTTAATCTGTTCATGTTGTTTGCTCCATGTCGGCTCCACTCG 199898 Query 545 GGGTTGCGCCCGGAATATCGCCCTCTCTTGGC--CGAGCGCTACAAGACTGTCATGGGAG 602 || | ||||||||||| | || | ||||| | || | | | || || |||| | Sbjct 199899 GGTCTTCGCCCGGAATACAGGCCCGTGTTGGCAACCAGGTATGCCA-AC-GTGATGGCTG 199956 Query 603 ACAAGAAGAAGGGTCTGGAGCCTTCAGCTCTTGCTATCAAATGCGCAGGATGGGACCAGC 662 ||| ||| || | || |||| ||| | || || | || ||||| || | Sbjct 199957 ACATATTGAAACCCCTTGCTCCGGCAGCCTGGGCTCTGAAGTGTCCGGGTTGGGATCAAC 200016 Query 663 ACCCGGCCTATGCCGCCCTCGCTGCGGCATATGACATGTTCTTGTTCAAGACCGAGAACC 722 | || || |||||||| || ||||| ||||| ||||||||||| |||||||| |||| || Sbjct 200017 AGCCAGCGTATGCCGCTCTTGCTGCTGCATACGACATGTTCTTATTCAAGACGGAGACCC 200076 Query 723 ACGAGTATGCGAAGGTGAGAATTGGCACCACCCCGATGCGGTTCAGGGACTGTACCATGC 782 |||| ||||| |||||||| || |||||||| || || || ||| |||| || || |||| Sbjct 200077 ACGAATATGCCAAGGTGAGGATCGGCACCACACCAATACGATTCCGGGATTGCACAATGC 200136 Query 783 TCGGAGTCTTGGAGGTCATGCGTAATGCCATGAAAGTGGAGAGCATGATTGATGCCACTT 842 | ||||| || |||| |||| | || || | || |||| | | ||| | | Sbjct 200137 TGGGAGTTCTGTAGGTGCTGCGGACAGCGATTCGCGCCGATGACATGCTAGGAGCCTCAT 200196 Query 843 ATTGGATCTGGAATGGACGTCTCGCAGACGAATTTGAGAAGATATACAAAGAAGGAGAGG 902 | ||||||||||| ||||| | || || || || |||||||| | |||||| || || | Sbjct 200197 ACTGGATCTGGAACGGACGGTTGGCCGATGAGTTCGAGAAGATCTTCAAAGACGGGGAAG 200256 Query 903 AGCTGGACAAGGCCGACAGCTACACCCCGTACTACGCAGGCTTCAAGTTGGGCAACAGGA 962 | ||||||||||| |||||||||||||| |||||||| || |||||| | || | | | Sbjct 200257 AACTGGACAAGGCAGACAGCTACACCCCTTACTACGCTGGATTCAAGCTTGGAACTCGAA 200316 Query 963 GCCCATACTCGGCCACGATGTCTCCTCAGCTCCACTATTTTGTTCACACAATTGGGTGTC 1022 |||| ||||| ||||| ||||| || ||||| ||||| || || ||||| || || || | Sbjct 200317 GCCCCTACTCCGCCACTATGTCGCCGCAGCTTCACTACTTCGTGCACACGATCGGATGCC 200376 Query 1023 TGGCCAACTCCAAACGTTCTATCAATGCCCGTGCGATTACGGAGGTGGGGATAGAGGATG 1082 | | || ||||| || || || ||||| || ||||| | || || || || | |||| Sbjct 200377 TCTCGAATTCCAAGCGCTCAATTAATGCTCGAGCGATAGCAGAAGTTGGCATTAAAGATG 200436 Query 1083 CCAGGGACAACGCCATCATTGTCGGGTACGTAATGGCTGGAAGACGTCGACATCGAGCTC 1142 || | ||||| || | |||||||| || || || || || ||||| |||||| |||| Sbjct 200437 CCCGAGACAATGCTCTGATTGTCGGATATGTTATCGCAGGTAGACGGCGACATGTTGCTC 200496 Query 1143 AGTACTTCCGCCCCAGCGAGGCCGAACTGTGGAAGGCTCCAGAGCCTAGGCCGAGAGCTG 1202 ||| || | | || || | | || || |||| | ||| |||| || || | | || Sbjct 200497 AGTTCTACAGGCCGAGTGGAGTTGAGCTCTGGAGAGTTCCTGAGCTCAGACCTCGCGTTG 200556 Query 1203 ACTGCCTCCCTGGAGCGAATGAGGCGGTCAGGG---ACAGGGG-TCAGGAGGACGAGGAG 1258 | ||| | || || || |||||||| ||||| |||||| ||| ||||| || Sbjct 200557 ATTGCTTGCCCGGGGC---TGAGGCGG-CAGGGGGCCCAGGGGATCAAGAGGATGATTTA 200612 Query 1259 AGCTCCGT---CTCAG-AAGTTAGCTCCGTCTGCTCTCGCATTGCGCGAGATTTCGATGG 1314 | || || ||| | ||||| | || | ||||| ||| ||||| |||| | Sbjct 200613 GGGTCGGTGTCCTCCGCAAGTTCGATCACT----TCTCGGGTTGTCCGAGACTTCGGGGA 200668 Query 1315 AGA---GGAGATCCCTGAGCCCCTCTCGAGCCGTGCTTCTGACTGGTACCAGTACATGGC 1371 ||| | | || ||||| | ||| | ||| || || ||||| || ||||||| Sbjct 200669 AGATCCCAATCTTCCCGAGCCGGTGACGAAACATGCCTCCGATTGGTATCAATACATGGT 200728 Query 1372 GTCGCAGCACTTCATCATGCCGAGACAAATGGAGA-TAGCCGCATGCAACATCCTGGCTG 1430 | | | ||| ||||||||| |||| ||| || |||| || || || | |||| Sbjct 200729 GGCCAACAACTCCATCATGCCCAGACGCATGCGGATTAGCGTGCTG-AATATTTTAGCTG 200787 Query 1431 CCTTGGACAAGACTCGCCCAGATACTATTGGCGATCACTTGAAGATGTGGGC 1482 |||||||||| ||||| || || || || || ||||| | |||| ||||| Sbjct 200788 CCTTGGACAAAACTCGTCCGGACACAATAGGGGATCATCTCAAGACCTGGGC 200839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35691526703976