Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_028265.1 Length=12004 Score E Sequences producing significant alignments: (Bits) Value seq2165 179 3e-41 >seq2165 Length=142177 Score = 179 bits (198), Expect = 3e-41 Identities = 202/269 (75%), Gaps = 1/269 (0%) Strand=Plus/Plus Query 10415 GACGGTGTGAAGTCGGATCTCGGGAGACAAATAGCACTGTCGACTGAACTGATCCGTCGG 10474 ||||| || ||||| ||||| || | ||||| | || | || || |||||| | ||| Sbjct 87923 GACGGCGTTAAGTCTGATCTAGGTCGTCAAATTGTTCTCACTACGGAGCTGATCAGGCGG 87982 Query 10475 TATCATGATCGGTTCCCGATCACTCTGACGCGTGAAAACGTTGCTAGAAGGATGAAGGCA 10534 || || || |||| ||||||||| | ||||| ||||| |||||| |||||||| || Sbjct 87983 TACCACGACCGGTACCCGATCACATTAACGCGGGAAAATGTTGCTGTCAGGATGAAAGCT 88042 Query 10535 ATCGAAGACATCATCCCTGAGGAGAACATGAGGCTCAAAATCATTATCCGCCAGGCAGCA 10594 || || | |||||| || |||||||| || | || || ||||||||||| |||||||| Sbjct 88043 ATTGAGGGCATCATTCCAGAGGAGAATATTCGCCTGAAGATCATTATCCGACAGGCAGCT 88102 Query 10595 CTATCAGGATTAACCTGTATTACCACCATCAAGAAAGCGATGGACACACGGCCTGATTTC 10654 || || || || || || |||||||||||||| |||| | ||| ||||||| ||||| Sbjct 88103 CTGTCTGGCTTGACGTGCATTACCACCATCAA-AAAGGTAAGGATACACGGCTCGATTTT 88161 Query 10655 CCTTGGGCTCGAGTGTGTGCCCTATTCCC 10683 || | ||| | || | || | ||||||| Sbjct 88162 CCGTTAGCTAGGGTTTTTGGCTTATTCCC 88190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 38296233780992