Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_000943.1 Length=11014 Score E Sequences producing significant alignments: (Bits) Value seq2801 113 3e-21 >seq2801 Length=191572 Score = 113 bits (124), Expect = 3e-21 Identities = 188/271 (69%), Gaps = 8/271 (3%) Strand=Plus/Plus Query 8942 GTGGAAGAACGCACGAGAAGCTGTGGAAGACCCAAAGTTCTGGGAAATGGTGGATGAGGA 9001 |||| |||| ||| | ||||| | |||||| | |||||| | |||||||||||||| Sbjct 184728 GTGGGAGAATGCAAACAAGGCTGTTGCAGACCCGAGATTCTGGAAGATGGTGGATGAGGA 184787 Query 9002 AAGGGAATGCCACCTCCGAGGGGAATGCCGAACCTGCATATATAACATGATGGGCAAACG 9061 || || |||||| | || || ||| | ||| | || |||| |||||| || | Sbjct 184788 GAGAGAGCTGCACCTCAGGGGTGAGTGCAGGCTATGCTTGTACAACACGATGGGGAAGAG 184847 Query 9062 TGAGAAAAAACCCGGAGAATTTGGAAAGGCCAAGGGAAGCAGAGCCATCTGGTTCATGTG 9121 || || || ||| | || || || || || || ||||| | | ||||||| |||||| Sbjct 184848 AGATAAGAAGCCCAGGGAGTTCGGCAATGCGAAAGGAAGTCGGGTAATCTGGTACATGTG 184907 Query 9122 GCTGGGAGCCAGATTCTTGGAGTTTGAAGCTCTAGGATTCCTCAATGAAGACCATTGGAT 9181 ||| ||| | | || ||||| ||||| || || || ||||| || || || ||||| Sbjct 184908 GCTAGGAAGCCGTTTTTTGGAATTTGAGGCCCTGGGCTTCCTAAACGAGGA----TGGAT 184963 Query 9182 G----AGTAGAGAGAATTCAGGAGGAGGAGT 9208 | | |||||||| ||||| ||||| Sbjct 184964 GGGCAAAAAGAGAGAAAACAGGATTTGGAGT 184994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35118217614392