Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_001437.1 Length=10976 Score E Sequences producing significant alignments: (Bits) Value seq3275 98.7 7e-17 >seq3275 Length=417686 Score = 98.7 bits (108), Expect = 7e-17 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 8953 AGGCTGTGGATGACCCGCGGTTCTGGGAGATGGTTGATGAAGAGAGGGAAAACCATCTGC 9012 ||||| ||| ||||| | |||||| |||| ||||| || || || ||| ||||| Sbjct 108521 AGGCTTTGGCCGACCCTAGATTCTGGAAGATTGTTGACGAGGAAAGAGAACTGCATCTCA 108580 Query 9013 GAGGAGAGTGTCATACATGTATCTACAACATGATGGGAAAAAGAGAGAAGAAGCCTGGAG 9072 | ||||| ||| || || ||||| | |||||||| | |||| || || ||| Sbjct 108581 GGGGAGAATGTAGGCTGTGCATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAG 108640 Query 9073 AGTTTGGAAAAGCTAAAGGAAGCAGGGCCATTTGGTTCATGTGGCTTGG-AGCACGGTAT 9131 | ||||| || || ||||||||| | | ||||||| ||||||| | || |||| | | Sbjct 108641 AATTTGGCAACGCAAAAGGAAGCCGCGTTATTTGGTACATGTGGTTAGGGAGCATATTCT 108700 Query 9132 CTAGAGTTTGAAGCTTTGGGGTTCCTGAATGAAGAC 9167 ||||||| || || | || || ||||||||||| Sbjct 108701 -TAGAGTTCGAGGCCCTAGGATTTTTGAATGAAGAC 108735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34996657014160