Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_001474.2 Length=10723 Score E Sequences producing significant alignments: (Bits) Value seq3275 107 1e-19 seq2801 104 2e-18 >seq3275 Length=417686 Score = 107 bits (118), Expect = 1e-19 Identities = 147/201 (73%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 8856 TAGGTTTTGGGAGCTGGTTGACAAGGAAAGGAATCTCCATCTTGAAGGAAAGTGTGAAAC 8915 ||| || ||| || | |||||| ||||||| | || ||||| ||| | ||| | Sbjct 108537 TAGATTCTGGAAGATTGTTGACGAGGAAAGAGAACTGCATCTCAGGGGAGAATGT--AGG 108594 Query 8916 ATGTG--TGTACAACATGATGGGAAAAAGAGAGAAGAAGCTAGGGGAATTCGGCAAGGCA 8973 |||| ||||||| | |||||||| | |||| || | | ||||| ||||| ||| Sbjct 108595 CTGTGCATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGGCAACGCA 108654 Query 8974 AAAGGCAGCAGAGCCATATGGTACATGTGGCT-TGGAGCACGCTTCTTAGAGTTTGAAGC 9032 ||||| ||| | | || |||||||||||| | |||||| ||||||||||| || || Sbjct 108655 AAAGGAAGCCGCGTTATTTGGTACATGTGGTTAGGGAGCA-TATTCTTAGAGTTCGAGGC 108713 Query 9033 CCTAGGATTCTTAAATGAAGA 9053 ||||||||| || |||||||| Sbjct 108714 CCTAGGATTTTTGAATGAAGA 108734 >seq2801 Length=191572 Score = 104 bits (114), Expect = 2e-18 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 8840 AGGCTGTTGAAGATAGTAGGTTTTGGGAGCTGGTTGACAAGGAAAGGAATCTCCATCTTG 8899 ||||||||| ||| || || ||| || |||| || |||| || | || || || Sbjct 184745 AGGCTGTTGCAGACCCGAGATTCTGGAAGATGGTGGATGAGGAGAGAGAGCTGCACCTCA 184804 Query 8900 AAGGAAAGTGTGAAACATGTGTGTACAACATGATGGGAAAAAGAGAGAAGAAGCTAGGGG 8959 || |||| ||| ||||||||| |||||| || ||||| ||||||| ||| Sbjct 184805 GGGGTGAGTGCAGGCTATGCTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGG 184864 Query 8960 AATTCGGCAAGGCAAAAGGCAGCAGAGCCATATGGTACATGTGGCTTGGAGCACGCTTCT 9019 | |||||||| || ||||| || | | || |||||||||||||| ||| || || | Sbjct 184865 AGTTCGGCAATGCGAAAGGAAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTT 184924 Query 9020 TAGAGTTTGAAGCCCTAGGATTCTTAAATGAAGAT 9054 | || ||||| ||||| || ||| |||| || ||| Sbjct 184925 TGGAATTTGAGGCCCTGGGCTTCCTAAACGAGGAT 184959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34187319333668