Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_001475.2 Length=10707 Score E Sequences producing significant alignments: (Bits) Value seq3275 91.5 1e-14 >seq3275 Length=417686 Score = 91.5 bits (100), Expect = 1e-14 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 8851 ATTTTGGAAACTTGTGGACAGAGAACGTGAACTCCACAAATTGGGCAAATGTGGAAGCTG 8910 ||| ||||| |||| ||| ||| | ||||| || ||| ||||| | || Sbjct 108540 ATTCTGGAAGATTGTTGACGAGGAAAGAGAACTGCATCTCAGGGGAGAATGTAGGCTGTG 108599 Query 8911 CGTTTATAACATGATGGGCAAGAGAGAGAAAAAACTTGGAGAGTTTGGCAAAGCAAAAGG 8970 | | || || | ||||| ||| | |||| | || |||| |||||||| |||||||| Sbjct 108600 CATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGGCAACGCAAAAGG 108659 Query 8971 CAGTAGAGCTATATGGTACATGTGGTT-GGGAGCCAGGTACCTTGAGTTCGAAGCCCTTG 9029 || | | ||| |||||||||||||| ||||| || | | | |||||||| ||||| | Sbjct 108660 AAGCCGCGTTATTTGGTACATGTGGTTAGGGAG-CATATTCTTAGAGTTCGAGGCCCTAG 108718 Query 9030 GATTCTTAAATGAAGAC 9046 |||| || ||||||||| Sbjct 108719 GATTTTTGAATGAAGAC 108735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34136135923044