Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_001477.1 Length=10735 Score E Sequences producing significant alignments: (Bits) Value seq2801 98.7 7e-17 seq3275 87.8 1e-13 >seq2801 Length=191572 Score = 98.7 bits (108), Expect = 7e-17 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 8924 TACAACATGATGGGAAAGAGAGAGAAAAAATTAGGAGAGTTCGGAAAGGCAAAAGGAAGT 8983 ||||||| |||||| |||||||| || || | |||||||| || || ||||||||| Sbjct 184828 TACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGGAGTTCGGCAATGCGAAAGGAAGT 184887 Query 8984 CGCGCAATATGGTACATGTGGTTGGGAGCGCGCTTTTTAGAGTTTGAAGCCCTTGGTTTC 9043 || | ||| |||||||||||| | ||| || ||||| || ||||| ||||| || ||| Sbjct 184888 CGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTTTGGAATTTGAGGCCCTGGGCTTC 184947 Query 9044 ATGAATGAAGAT 9055 | || || ||| Sbjct 184948 CTAAACGAGGAT 184959 >seq3275 Length=417686 Score = 87.8 bits (96), Expect = 1e-13 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 8924 TACAACATGATGGGAAAGAGAGAGAAAAAATTAGGAGAGTTCGGAAAGGCAAAAGGAAGT 8983 ||||| | ||||||||| | |||| | | |||| || || || ||||||||||| Sbjct 108604 TACAATACAATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGGCAACGCAAAAGGAAGC 108663 Query 8984 CGCGCAATATGGTACATGTGGTT-GGGAGCGCGCTTTTTAGAGTTTGAAGCCCTTGGTTT 9042 |||| || |||||||||||||| |||||| || |||||||| || ||||| || || Sbjct 108664 CGCGTTATTTGGTACATGTGGTTAGGGAGC-ATATTCTTAGAGTTCGAGGCCCTAGGATT 108722 Query 9043 CATGAATGAAGA 9054 |||||||||| Sbjct 108723 TTTGAATGAAGA 108734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34225706891636