Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_001563.2 Length=10962 Score E Sequences producing significant alignments: (Bits) Value seq2801 131 1e-26 >seq2801 Length=191572 Score = 131 bits (144), Expect = 1e-26 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 8950 GCTGTAGAGGATCCAAAGTTTTGGGAGATGGTGGATGAGGAGCGTGAAGCGCATCTCCGT 9009 ||||| | || || | || ||| ||||||||||||||||| | || ||| ||| | Sbjct 184747 GCTGTTGCAGACCCGAGATTCTGGAAGATGGTGGATGAGGAGAGAGAGCTGCACCTCAGG 184806 Query 9010 GGAGAATGCAACACCTGCATCTACAACATGATGGGAAAGAGAGAGAAGAAGCCTGGAGAG 9069 || || |||| ||| | ||||||| |||||| |||||||| |||||||| | ||| Sbjct 184807 GGTGAGTGCAGGCTATGCTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGGAG 184866 Query 9070 TTCGGCAAAGCTAAAGGCAGCAGAGCCATCTGGTTCATGTGGCTGGGGGCCCGCTTCCTG 9129 |||||||| || ||||| || | | ||||||| ||||||||| || ||| || || Sbjct 184867 TTCGGCAATGCGAAAGGAAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTTTG 184926 Query 9130 GAGTTTGAAGCTCTCGGATTCCTCAATGAAGA 9161 || ||||| || || || ||||| || || || Sbjct 184927 GAATTTGAGGCCCTGGGCTTCCTAAACGAGGA 184958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34951871529864