Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_001672.1 Length=11141 Score E Sequences producing significant alignments: (Bits) Value seq2801 147 2e-31 seq3275 122 6e-24 >seq2801 Length=191572 Score = 147 bits (162), Expect = 2e-31 Identities = 174/232 (75%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 8923 TGGGCAAGTGCAAGAGAGGCTGTAGAGGATCCTGCATTCTGGCGCCTCGTGGATGAAGAG 8982 |||| | ||||| ||||||| | || || ||||||| | |||||||| ||| Sbjct 184729 TGGGAGAATGCAAACAAGGCTGTTGCAGACCCGAGATTCTGGAAGATGGTGGATGAGGAG 184788 Query 8983 AGAGAAAGGCACCTCATGGGGAGATGTGC--GCACTGCGTGTACAACATGATGGGCAAGA 9040 ||||| |||||||| |||| || |||| || ||| ||||||||| |||||| |||| Sbjct 184789 AGAGAGCTGCACCTCA-GGGGTGA-GTGCAGGCTATGCTTGTACAACACGATGGGGAAGA 184846 Query 9041 GAGAAAAGAAACTGGGAGAGTTCGGAGTGGCGAAAGGAAGTCGGGCCATTTGGTACATGT 9100 |||| ||||| | | |||||||| |||||||||||||||| || |||||||||| Sbjct 184847 GAGATAAGAAGCCCAGGGAGTTCGGCAATGCGAAAGGAAGTCGGGTAATCTGGTACATGT 184906 Query 9101 GGCTGGGGAGTCGCTTTTTGGAGTTCGAGGCTCTTGGATTCTTGAATGAAGA 9152 |||| || || || |||||||| || ||||| || || ||| | || || || Sbjct 184907 GGCTAGGAAGCCGTTTTTTGGAATTTGAGGCCCTGGGCTTCCTAAACGAGGA 184958 >seq3275 Length=417686 Score = 122 bits (134), Expect = 6e-24 Identities = 207/295 (70%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 8923 TGGGCAAGTGCAAGAGAGGCTGTAGAGGATCCTGCATTCTGGCGCCTCGTGGATGAAGAG 8982 |||| ||| | || ||||| | | || ||| ||||||| | || || || || Sbjct 108505 TGGGAAAGCGGAAACAAGGCTTTGGCCGACCCTAGATTCTGGAAGATTGTTGACGAGGAA 108564 Query 8983 AGAGAAAGGCACCTCATGGGGAGA-TGTGCGCACTGCGTGTACAACATGATGGGCAAGAG 9041 |||||| ||| |||| ||||||| ||| || ||| ||||||| | ||||| ||| | Sbjct 108565 AGAGAACTGCATCTCA-GGGGAGAATGTAGGCTGTGCATGTACAATACAATGGGAAAGCG 108623 Query 9042 AGAAAAGAAACTGGGAGAGTTCGGAGTGGCGAAAGGAAGTCGGGCCATTTGGTACATGTG 9101 || | || || |||| || || || |||||||| || | |||||||||||||| Sbjct 108624 GGAGATGAGACCCCGAGAATTTGGCAACGCAAAAGGAAGCCGCGTTATTTGGTACATGTG 108683 Query 9102 GCTGGGGAGTCGCTTTTTGGAGTTCGAGGCTCTTGGATTCTTGAATGAAGACCATTGGGC 9161 | | ||||| || || ||||||||||| || ||||| |||||||||||| ||||| Sbjct 108684 GTTAGGGAGCATATTCTTAGAGTTCGAGGCCCTAGGATTTTTGAATGAAGACGGATGGGC 108743 Query 9162 CTCTAGAGAGTCCAGTGGAGCTGGAGT-TGAGGGAATAAGCTTGAACTACCTGGG 9215 ||||| || |||| ||| || | |||| | | ||||||||||||| Sbjct 108744 AAAAAGAGAAAACACTGGATTTGGGGTGTCAGGG-CTGGGAGTGAACTACCTGGG 108797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35524485936220