Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_001809.1 Length=10871 Score E Sequences producing significant alignments: (Bits) Value seq2801 136 3e-28 >seq2801 Length=191572 Score = 136 bits (150), Expect = 3e-28 Identities = 166/224 (74%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 8936 AGGCTGTGGTGGTCCCTGCATTCTGGGCCCTCGTGGATGAGGTGAGAGAGAGGCATCTCG 8995 ||||||| | | ||| ||||||| | |||||||||| ||||||| ||| ||| Sbjct 184745 AGGCTGTTGCAGACCCGAGATTCTGGAAGATGGTGGATGAGGAGAGAGAGCTGCACCTCA 184804 Query 8996 TGGGGTG-GTGCGCACACTGCGTGTACATCATGATGGGCATGAGAGAAAAGAAACTGGGA 9054 |||||| |||| | ||| |||||| || |||||| | |||||| ||||| | | Sbjct 184805 -GGGGTGAGTGCAGGCTATGCTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGG 184863 Query 9055 GAGTTCGGAGTGGCGAAGGGCAGCAGGGCCATCTGGTACATGTGGCTGGGGAGCCGCTTC 9114 |||||||| ||||| || || ||| ||||||||||||||||| || ||||| || Sbjct 184864 GAGTTCGGCAATGCGAAAGGAAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTT 184923 Query 9115 CTGGAGTTTGAGGCCCTCGGATTCCTAAATAAGGATCACTGGGC 9158 |||| ||||||||||| || |||||||| ||||| ||||| Sbjct 184924 TTGGAATTTGAGGCCCTGGGCTTCCTAAACGAGGATGGATGGGC 184967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34660765881940