Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_002031.1 Length=10862 Score E Sequences producing significant alignments: (Bits) Value seq2801 147 2e-31 >seq2801 Length=191572 Score = 147 bits (162), Expect = 2e-31 Identities = 274/398 (69%), Gaps = 7/398 (2%) Strand=Plus/Plus Query 8798 AGAGAAAAGAACCCCAGACTGTGCACAAAGGAAGAATTTATTGCAAAAGTCCGAAGTCAT 8857 |||| | ||| || || | ||||| ||||| ||||| | |||| |||| | | || Sbjct 184636 AGAGGCATGAAGCCAAGGATCTGCACGAAGGACGAATTCCTCCAAAAACTCCGCAATGAT 184695 Query 8858 GCAGCCATTGGAGCTTACCTGGAAGAACAAGAACA-GTGGAAGACTGCCAATGAGGCTGT 8916 || | |||| | |||||| || | || |||| ||| ||| || ||||||| Sbjct 184696 GCCGGAGTTGGGGT----CTGGAATGACTATCTCATGTGGGAGAATGCAAACAAGGCTGT 184751 Query 8917 CCAAGACCCAAAGTTCTGGGAACTGGTGGATGAAGAAAGGAAGCTGCACCAACAAGGCAG 8976 |||||| | |||||| | |||||||||| || || ||||||||| || || | Sbjct 184752 TGCAGACCCGAGATTCTGGAAGATGGTGGATGAGGAGAGAGAGCTGCACCT-CAGGGGTG 184810 Query 8977 -GTGTCGGACTTGTGTGTACAACATGATGGGGAAAAGAGAGAAGAAGCTGTCAGAGTTTG 9035 ||| || || ||||||||| ||||||||| ||||| ||||||| ||||| | Sbjct 184811 AGTGCAGGCTATGCTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGGAGTTCG 184870 Query 9036 GGAAAGCAAAGGGAAGCCGTGCCATATGGTATATGTGGCTGGGAGCGCGGTATCTTGAGT 9095 | || || || ||||| || | || ||||| |||||||| ||| || | | | || | Sbjct 184871 GCAATGCGAAAGGAAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTTTGGAAT 184930 Query 9096 TTGAGGCCCTGGGATTCCTGAATGAGGACCATTGGGCTTCCAGGGAAAACTCAGGAGGAG 9155 ||||||||||||| ||||| || ||||| ||||| || || || ||||| | Sbjct 184931 TTGAGGCCCTGGGCTTCCTAAACGAGGATGGATGGGCAAAAAGAGAGAAAACAGGATTTG 184990 Query 9156 GAGTGGAAGGCATTGGCTTACAATACCTAGGATATGTG 9193 ||||| ||| | || | | || |||||||||||| Sbjct 184991 GAGTGTCAGGGCTGGGAGTGAATTATCTAGGATATGTG 185028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34631975213464