Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_003635.1 Length=10600 Score E Sequences producing significant alignments: (Bits) Value seq2801 80.6 2e-11 seq3275 78.8 6e-11 >seq2801 Length=191572 Score = 80.6 bits (88), Expect = 2e-11 Identities = 134/191 (70%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 8817 AGGCAGTTGACGATCCTAGGTTCTGGAACATGGTGCAGAAAGAAAGAGATTTACACCTAC 8876 |||| |||| || || || |||||||| |||||| | | || ||||| | ||||| | Sbjct 184745 AGGCTGTTGCAGACCCGAGATTCTGGAAGATGGTGGATGAGGAGAGAGAGCTGCACCT-C 184803 Query 8877 AAGGGAAA-TGTGAGATGTGTGTGTACAACCTCATGGGAAAAAGTGAAAAGAAACCTGGG 8935 | ||| | || | | || |||||||| ||||| || || || ||||| || || Sbjct 184804 AGGGGTGAGTGCAGGCTATGCTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGG 184863 Query 8936 GATTTTGGAGTTGCCAAGGGGAGCCGTACCATCTGGTACATGTGGCTCGGCAGTAGATTC 8995 || || || ||| || || || || ||||||||||||||||| || || | || Sbjct 184864 GAGTTCGGCAATGCGAAAGGAAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTT 184923 Query 8996 CTGGAATTTGA 9006 |||||||||| Sbjct 184924 TTGGAATTTGA 184934 >seq3275 Length=417686 Score = 78.8 bits (86), Expect = 6e-11 Identities = 142/205 (69%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 8827 CGATCCTAGGTTCTGGAACATGGTGCAGAAAGAAAGAGATTTACACCTACAAGGGA-AAT 8885 ||| ||||| |||||||| || || | | |||||||| | || || || |||| ||| Sbjct 108531 CGACCCTAGATTCTGGAAGATTGTTGACGAGGAAAGAGAACTGCATCT-CAGGGGAGAAT 108589 Query 8886 GTGAGATGTGTGTGTACAACCTCATGGGAAAAAGTGAAAAGAAACCTGGGGATTTTGGAG 8945 || | |||| ||||||| |||||||| | || | || ||| | || ||||| Sbjct 108590 GTAGGCTGTGCATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGGCA 108649 Query 8946 TTGCCAAGGGGAGCCGTACCATCTGGTACATGTGGCTCGGCAGTAGATTCCTGGAATTTG 9005 || || || ||||| || |||||||||||| | || || | |||| | || || | Sbjct 108650 ACGCAAAAGGAAGCCGCGTTATTTGGTACATGTGGTTAGGGAGCATATTCTTAGAGTTCG 108709 Query 9006 AAAGTTTTGGATTTCTGAATGAAGA 9030 | | |||||| |||||||||| Sbjct 108710 AGGCCCTAGGATTTTTGAATGAAGA 108734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 33793846864496