Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_003675.1 Length=10140 Score E Sequences producing significant alignments: (Bits) Value seq2801 95.1 8e-16 seq3275 84.2 1e-12 >seq2801 Length=191572 Score = 95.1 bits (104), Expect = 8e-16 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 8737 GACCCCAGGTTTTGGAATATGGTGGACAAAGAGAGGAAACTACACCTGGAAGGAAAATGT 8796 ||||| || || ||||| |||||||| | ||||| | || ||||| || | || Sbjct 184756 GACCCGAGATTCTGGAAGATGGTGGATGAGGAGAGAGAGCTGCACCTCAGGGGTGAGTGC 184815 Query 8797 GAAATGTGCATCTATAACATGATGGGTAAAAGAGAAAAGAAACCAGGTGAGTTTGGATGT 8856 | ||| | || |||| |||||| || ||||| ||||| || | ||||| || | Sbjct 184816 AGGCTATGCTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGGAGTTCGGCAAT 184875 Query 8857 GCCAAGGGTAGCCGGACCATATGGTACATGTGGTTAGGTAGCAGGTTCCTAGAATTTGAA 8916 || || || || ||| || |||||||||||| |||| ||| | || | |||||||| Sbjct 184876 GCGAAAGGAAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTTTGGAATTTGAG 184935 Query 8917 TCTTTCGGCTTCTTGAATGAGGAACATTGGGCATCAAGAGAG 8958 | | |||||| | || ||||| |||||| ||||||| Sbjct 184936 GCCCTGGGCTTCCTAAACGAGGATGGATGGGCAAAAAGAGAG 184977 >seq3275 Length=417686 Score = 84.2 bits (92), Expect = 1e-12 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 8737 GACCCCAGGTTTTGGAATATGGTGGACAAAGAGAGGAAACTACACCTGGAAGGAAAATGT 8796 ||||| || || ||||| || || ||| | || || |||| || || ||| ||||| Sbjct 108532 GACCCTAGATTCTGGAAGATTGTTGACGAGGAAAGAGAACTGCATCTCAGGGGAGAATGT 108591 Query 8797 GAAATGTGCATCTATAACATGATGGGTAAAAGAGAAAAGAAACCAGGTGAGTTTGGATGT 8856 ||||||| || || | ||||| || | || | || ||| | || ||||| Sbjct 108592 AGGCTGTGCATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGGCAAC 108651 Query 8857 GCCAAGGGTAGCCGGACCATATGGTACATGTGGTTAGGTAGCAGGTTCCTAGAATTTGAA 8916 || || || ||||| || ||||||||||||||||| |||| ||| |||| || || Sbjct 108652 GCAAAAGGAAGCCGCGTTATTTGGTACATGTGGTTAGGGAGCATATTCTTAGAGTTCGAG 108711 Query 8917 TCTTTCGGCTTCTTGAATGAGGAACATTGGGCATCAAGAGA 8957 | | || || |||||||| || |||||| |||||| Sbjct 108712 GCCCTAGGATTTTTGAATGAAGACGGATGGGCAAAAAGAGA 108752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32322323809056