Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_003676.1 Length=10116 Score E Sequences producing significant alignments: (Bits) Value seq3275 111 1e-20 seq2801 100 2e-17 >seq3275 Length=417686 Score = 111 bits (122), Expect = 1e-20 Identities = 189/272 (69%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 8713 GACCCAAAATTTTGGAACATGGTTGATAAAGAGCGGCAATTGCATCTCAAGGGCAAATGC 8772 ||||| | ||| ||||| || ||||| | || | || ||||||||| ||| |||| Sbjct 108532 GACCCTAGATTCTGGAAGATTGTTGACGAGGAAAGAGAACTGCATCTCAGGGGAGAATGT 108591 Query 8773 CACAACTGTG--TCTATAACCTGATGGGCAAACGAGAGAAAAAACCCGGTGAGTTTGGAG 8830 ||||| | || || ||||| || || |||| | |||| | || ||||| Sbjct 108592 AGG--CTGTGCATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGGCA 108649 Query 8831 TCGCCAAGGGATCACGCACCATCTGGTACATGTGGTTGGGGAGCAGATTCCTGGAGTTTG 8890 ||| || ||| ||| || |||||||||||||| ||||||| |||| | ||||| | Sbjct 108650 ACGCAAAAGGAAGCCGCGTTATTTGGTACATGTGGTTAGGGAGCATATTCTTAGAGTTCG 108709 Query 8891 AGGCCCTTGGATTTCTAAATGAGGAAAGATGGGCCTCTAGAGACATCTCCGGAGGAGGCG 8950 ||||||| |||||| | ||||| || ||||||| ||||| | | | ||| || | Sbjct 108710 AGGCCCTAGGATTTTTGAATGAAGACGGATGGGCAAAAAGAGAAAACACTGGATTTGGGG 108769 Query 8951 TGGAAGGGATCGGAATTAACTATCTAGGGTAT 8982 || |||| | ||| | ||||| || || ||| Sbjct 108770 TGTCAGGGCTGGGAGTGAACTACCTGGGTTAT 108801 >seq2801 Length=191572 Score = 100 bits (110), Expect = 2e-17 Identities = 189/278 (68%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 8713 GACCCAAAATTTTGGAACATGGTTGATAAAGAGCGGCAATTGCATCTCAAGGGCAAATGC 8772 ||||| | ||| ||||| ||||| ||| | ||| | | |||| |||| ||| | ||| Sbjct 184756 GACCCGAGATTCTGGAAGATGGTGGATGAGGAGAGAGAGCTGCACCTCAGGGGTGAGTGC 184815 Query 8773 CACAACTGTGTCTATAACCTGATGGGCAAACGAGAGAAAAAACCCGGTGAGTTTGGAGTC 8832 || | || ||| |||||| || |||| || || ||| | ||||| || Sbjct 184816 AGGCTATGCTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGGAGTTCGGCAAT 184875 Query 8833 GCCAAGGGATCACGCACCATCTGGTACATGTGGTTGGGGAGCAGATTCCTGGAGTTTGAG 8892 || || ||| || ||||||||||||||| | || ||| | || |||| |||||| Sbjct 184876 GCGAAAGGAAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTTTGGAATTTGAG 184935 Query 8893 GCCCTTGGATTTCTAAATGAGGAAAGATGGGCCTCTAGAGACATCTCCGGAGGAGGCGTG 8952 ||||| || || ||||| ||||| ||||||| ||||| | | ||| || ||| Sbjct 184936 GCCCTGGGCTTCCTAAACGAGGATGGATGGGCAAAAAGAGAGAAAACAGGATTTGGAGTG 184995 Query 8953 GAAGGGATCGGAATTAACTATCTAGGGTATCATCTTGA 8990 |||| | ||| | || |||||||| ||| ||||| Sbjct 184996 TCAGGGCTGGGAGTGAATTATCTAGGATATGTGCTTGA 185033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32245548693120