Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_003687.1 Length=10839 Score E Sequences producing significant alignments: (Bits) Value seq2801 125 5e-25 >seq2801 Length=191572 Score = 125 bits (138), Expect = 5e-25 Identities = 163/225 (72%), Gaps = 8/225 (4%) Strand=Plus/Plus Query 8914 GCAAAAGAGGCAGTGGAAGATCCAGAATTTTGGAAATTGGTGGATGAAGAGCGCTCCAGA 8973 ||||| |||| || | ||| || ||| ||||| |||||||||| ||| | ||| Sbjct 184738 GCAAACAAGGCTGTTGCAGACCCGAGATTCTGGAAGATGGTGGATGAGGAGAG----AGA 184793 Query 8974 ----CACTTGAAAGGTCAGTGCCGACATTGTGTGTACAACATGATGGGAAAGAGAGAGAA 9029 ||| | | ||| ||||| | | || ||||||||| |||||| |||||||| || Sbjct 184794 GCTGCACCTCAGGGGTGAGTGCAGGCTATGCTTGTACAACACGATGGGGAAGAGAGATAA 184853 Query 9030 GAAGCTAGGTGAGTTTGGAGTTGCAAAAGGCAGCAGGGCCATCTGGTACATGTGGCTTGG 9089 ||||| | ||||| || ||| ||||| || ||| ||||||||||||||||| || Sbjct 184854 GAAGCCCAGGGAGTTCGGCAATGCGAAAGGAAGTCGGGTAATCTGGTACATGTGGCTAGG 184913 Query 9090 AAGCCGCTTCCTTGAGTTTGAGGTCCTTGGGTTTCTTAATGAGGA 9134 |||||| || | || ||||||| ||| || || || || ||||| Sbjct 184914 AAGCCGTTTTTTGGAATTTGAGGCCCTGGGCTTCCTAAACGAGGA 184958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34558399060692