Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_003690.1 Length=10943 Score E Sequences producing significant alignments: (Bits) Value seq2801 109 4e-20 >seq2801 Length=191572 Score = 109 bits (120), Expect = 4e-20 Identities = 172/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 8921 TGGAAGAGTGCGAGAGAAGCAGTGGAAGATCCTGAG-TTCTGGAGTCTTGTTGAGGCTGA 8979 ||| ||| ||| | | || || | ||| || ||| ||||||| | || || | || Sbjct 184729 TGGGAGAATGCAAACAAGGCTGTTGCAGACCC-GAGATTCTGGAAGATGGTGGATGAGGA 184787 Query 8980 GAGAGAGCGCCACTTGCAGGGGAGA-TGCGCCCATTGTGTGTACAACATGATGGGGAAAA 9038 |||||||| ||| | |||||| || ||| | || ||||||||| ||||||||| | Sbjct 184788 GAGAGAGCTGCACCT-CAGGGGTGAGTGCAGGCTATGCTTGTACAACACGATGGGGAAGA 184846 Query 9039 GAGAGAAAAAGCTTGGTGAATTTGGAGTAGCCAAGGGCAGCAGGGCCATCTGGTACATGT 9098 |||| || |||| | || || || || || || || ||| ||||||||||||| Sbjct 184847 GAGATAAGAAGCCCAGGGAGTTCGGCAATGCGAAAGGAAGTCGGGTAATCTGGTACATGT 184906 Query 9099 GGCTGGGCAGTCGGTTCCTGGAGTTTGAGGCCCTCGGTTTCCTCAATGAGGATCACTGGG 9158 |||| || || || || |||| ||||||||||| || ||||| || |||||| |||| Sbjct 184907 GGCTAGGAAGCCGTTTTTTGGAATTTGAGGCCCTGGGCTTCCTAAACGAGGATGGATGGG 184966 Query 9159 C 9159 | Sbjct 184967 C 184967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34891091229748