Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_004119.1 Length=10690 Score E Sequences producing significant alignments: (Bits) Value seq2801 98.7 7e-17 seq3275 86.0 4e-13 >seq2801 Length=191572 Score = 98.7 bits (108), Expect = 7e-17 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 8836 AGATTCTGGAATATGGTAGACAAAGAAAGACAGTTACATCTCACTGGTGACTGTGAAATG 8895 ||||||||||| ||||| || | || ||| || | || |||| ||||| || | Sbjct 184762 AGATTCTGGAAGATGGTGGATGAGGAGAGAGAGCTGCACCTCAGGGGTGAGTGCAGGCTA 184821 Query 8896 TGTGTCTACAACCTCATGGGCAAGAGAGAAAAGAAACCAGGAGACTTTGGAGTAGCAAAA 8955 || | |||||| ||||| |||||||| ||||| || | || || || || ||| Sbjct 184822 TGCTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGGAGTTCGGCAATGCGAAA 184881 Query 8956 GGAAGTAGGACTATCTGGTACATGTGGTTGGGAAGTCGCTTTCTAGAATTTGAAAGCTTT 9015 |||||| || ||||||||||||||| | ||||| || ||| | |||||||| | | Sbjct 184882 GGAAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTTTGGAATTTGAGGCCCTG 184941 Query 9016 GGCTTTTTGAACGAAGA 9032 ||||| | ||||| || Sbjct 184942 GGCTTCCTAAACGAGGA 184958 >seq3275 Length=417686 Score = 86.0 bits (94), Expect = 4e-13 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 8836 AGATTCTGGAATATGGTAGACAAAGAAAGACAGTTACATCTCACTGGTGACTGTGAAATG 8895 ||||||||||| || || ||| | |||||| | | ||||||| || || ||| || Sbjct 108538 AGATTCTGGAAGATTGTTGACGAGGAAAGAGAACTGCATCTCAGGGGAGAATGTAGGCTG 108597 Query 8896 TGTGTCTACAACCTCATGGGCAAGAGAGAAAAGAAACCAGGAGACTTTGGAGTAGCAAAA 8955 || | ||||| ||||| ||| | || | || ||| |||| ||||| |||||| Sbjct 108598 TGCATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGGCAACGCAAAA 108657 Query 8956 GGAAGTAGGACTATCTGGTACATGTGGTTGGGAAGTCGCTTTCTAGAATTTGAAAGCTTT 9015 ||||| | ||| |||||||||||||| || || || |||| || || | | Sbjct 108658 GGAAGCCGCGTTATTTGGTACATGTGGTTAGGGAGCATATTCTTAGAGTTCGAGGCCCTA 108717 Query 9016 GGCTTTTTGAACGAAGA 9032 || |||||||| ||||| Sbjct 108718 GGATTTTTGAATGAAGA 108734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34081753549256