Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_004355.1 Length=10685 Score E Sequences producing significant alignments: (Bits) Value seq2801 118 7e-23 seq3275 89.7 4e-14 >seq2801 Length=191572 Score = 118 bits (130), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 8941 CCCGAGTTT-TGGAGGCTTGTTGATGAGGAAAGAGAGAGACATCTTAGAGGACGGTGTGC 8999 |||||| || |||| | | || |||||||| |||||| || || || || ||| Sbjct 184758 CCCGAGATTCTGGAAGATGGTGGATGAGGAGAGAGAGCTGCACCTCAGGGGTGAGTGCAG 184817 Query 9000 CCAGTGCGTGTACAACATGATGGGCAAGAGAGAGAAGAAACTTGGTGAATTCGGTGTCGC 9059 | ||| ||||||||| |||||| |||||||| ||||| | | || ||||| || Sbjct 184818 GCTATGCTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGGAGTTCGGCAATGC 184877 Query 9060 CAAGGGGAGCCGCGCCATCTGGTATATGTGGTTGGGGAGCCGGTATCTGGAATTTGAGGC 9119 || || || || | |||||||| |||||| | || ||||| | | ||||||||||||| Sbjct 184878 GAAAGGAAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTTTGGAATTTGAGGC 184937 Query 9120 ACTGGGTTTCCTCAATGAGGATCACTGGGC 9149 ||||| ||||| || |||||| ||||| Sbjct 184938 CCTGGGCTTCCTAAACGAGGATGGATGGGC 184967 >seq3275 Length=417686 Score = 89.7 bits (98), Expect = 4e-14 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 8947 TTTTGGAGGCTTGTTGATGAGGAAAGAGAGAGACATCTTAGAGGACGGTGTGCCCAGTGC 9006 || |||| | ||||||| ||||||||||| ||||| || ||| ||| | |||| Sbjct 108541 TTCTGGAAGATTGTTGACGAGGAAAGAGAACTGCATCTCAGGGGAGAATGTAGGCTGTGC 108600 Query 9007 GTGTACAACATGATGGGCAAGAGAGAGAAGAAACTTGGTGAATTCGGTGTCGCCAAGGGG 9066 ||||||| | ||||| ||| | |||| || || | ||||| || ||| || || Sbjct 108601 ATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGGCAACGCAAAAGGA 108660 Query 9067 AGCCGCGCCATCTGGTATATGTGGTTGGGGAGCCGGTATCTGGAATTTGAGGCACTGGGT 9126 ||||||| || ||||| |||||||| |||||| | | || || ||||| || || Sbjct 108661 AGCCGCGTTATTTGGTACATGTGGTTAGGGAGCATATTCTTAGAGTTCGAGGCCCTAGGA 108720 Query 9127 TTCCTCAATGAGGA 9140 || | ||||| || Sbjct 108721 TTTTTGAATGAAGA 108734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34065758733436