Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_005062.1 Length=10787 Score E Sequences producing significant alignments: (Bits) Value seq2801 134 9e-28 seq3275 118 7e-23 >seq2801 Length=191572 Score = 134 bits (148), Expect = 9e-28 Identities = 155/205 (76%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 8969 TGGTGGACGAAGAGAGAGAAAGGCATCTAAAAGGAAGATGTGCTCACT--GCGTGTACAA 9026 ||||||| || |||||||| ||| || | || || |||| || || ||||||| Sbjct 184775 TGGTGGATGAGGAGAGAGAGCTGCACCTCAGGGGT-GA-GTGCAGGCTATGCTTGTACAA 184832 Query 9027 CATGATGGGCAAGAGAGAGAAAAAGCTGGGGGAGTTCGGCGTGGCAAAAGGAAGCCGAGC 9086 || |||||| |||||||| || |||| ||||||||||| || |||||||| || | Sbjct 184833 CACGATGGGGAAGAGAGATAAGAAGCCCAGGGAGTTCGGCAATGCGAAAGGAAGTCGGGT 184892 Query 9087 TATCTGGTACATGTGGCTGGGGAGCCGCTTTCTGGAGTTTGAGGCCCTTGGATTCCTGAA 9146 ||||||||||||||||| || ||||| ||| |||| ||||||||||| || ||||| || Sbjct 184893 AATCTGGTACATGTGGCTAGGAAGCCGTTTTTTGGAATTTGAGGCCCTGGGCTTCCTAAA 184952 Query 9147 TGAAGACCACTGGGCATCTAGAGAG 9171 || || |||||| |||||| Sbjct 184953 CGAGGATGGATGGGCAAAAAGAGAG 184977 >seq3275 Length=417686 Score = 118 bits (130), Expect = 7e-23 Identities = 173/245 (71%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 8971 GTGGACGAAGAGAGAGAAAGGCATCTAAAAGGAAGATGTGCTCACTGCGTGTACAACATG 9030 || ||||| || |||||| |||||| | ||| |||| | ||| ||||||| | Sbjct 108553 GTTGACGAGGAAAGAGAACTGCATCTCAGGGGAGAATGTAGGCTGTGCATGTACAATACA 108612 Query 9031 ATGGGCAAGAGAGAGAAAAAGCTGGGGGAGTTCGGCGTGGCAAAAGGAAGCCGAGCTATC 9090 ||||| ||| | |||| | | | || || ||| |||||||||||||| | ||| Sbjct 108613 ATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGGCAACGCAAAAGGAAGCCGCGTTATT 108672 Query 9091 TGGTACATGTGGCTGGGGAGCCGCTTTCTGGAGTTTGAGGCCCTTGGATTCCTGAATGAA 9150 |||||||||||| | |||||| || | ||||| |||||||| ||||| |||||||| Sbjct 108673 TGGTACATGTGGTTAGGGAGCATATTCTTAGAGTTCGAGGCCCTAGGATTTTTGAATGAA 108732 Query 9151 GACCACTGGGCATCTAGAGAGTCCAGTGGAGCAGGGGTGGAGGGGATAAGTCTCAACTAC 9210 ||| |||||| ||||| || |||| |||||| ||| | | | |||||| Sbjct 108733 GACGGATGGGCAAAAAGAGAAAACACTGGATTTGGGGTGTCAGGGCTGGGAGTGAACTAC 108792 Query 9211 CTGGG 9215 ||||| Sbjct 108793 CTGGG 108797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34392052976164