Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_006551.1 Length=11066 Score E Sequences producing significant alignments: (Bits) Value seq2801 134 1e-27 >seq2801 Length=191572 Score = 134 bits (148), Expect = 1e-27 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 8960 AGGCTGTAGAGGACCCTCGGTTCTGGGAAATGGTGGACGAAGAAAGGGAGAACCATCTGA 9019 ||||||| | ||||| | |||||| | |||||||| || || || ||| || || | Sbjct 184745 AGGCTGTTGCAGACCCGAGATTCTGGAAGATGGTGGATGAGGAGAGAGAGCTGCACCTCA 184804 Query 9020 AAGGAGAGTGCCACACATGCATTTACAACATGATGGGGAAGCGTGAGAAGAAGCTCGGAG 9079 || |||||| |||| | ||||||| |||||||||| | || ||||||| | | | Sbjct 184805 GGGGTGAGTGCAGGCTATGCTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGG 184864 Query 9080 AGTTTGGTAAAGCGAAAGGTAGTCGAGCCATATGGTTCATGTGGCTAGGCGCCAGATTCC 9139 |||| || || |||||||| ||||| | || |||| |||||||||||| | | || Sbjct 184865 AGTTCGGCAATGCGAAAGGAAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTT 184924 Query 9140 TGGAGTTTGAAGCTCTGGGCTTTCTGAATGAGGA 9173 |||| ||||| || |||||||| || || ||||| Sbjct 184925 TGGAATTTGAGGCCCTGGGCTTCCTAAACGAGGA 184958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35284563698920