Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_006947.1 Length=10653 Score E Sequences producing significant alignments: (Bits) Value seq2801 116 3e-22 seq3275 84.2 1e-12 >seq2801 Length=191572 Score = 116 bits (128), Expect = 3e-22 Identities = 179/253 (71%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 8814 CAAGTGGAAAAGTGCCAAAGAGGCTGTCGAGGACCCGGCCTTCTGGAACCTGGTTGATGA 8873 || |||| | | ||| || ||||||| | |||||| |||||||| |||| ||||| Sbjct 184725 CATGTGGGAGAATGCAAACAAGGCTGTTGCAGACCCGAGATTCTGGAAGATGGTGGATGA 184784 Query 8874 AGAACGGGAGCTCCACAGGCAAGGACGT-TGTTCCCAATGTGTCTACAACATGATGGGAA 8932 || | ||||| ||| || || | || | ||| | ||||||| |||||| | Sbjct 184785 GGAGAGAGAGCTGCACCT-CAGGGGTGAGTGCAGGCTATGCTTGTACAACACGATGGGGA 184843 Query 8933 AGCGTGAGAAAAAGCTTGGGGAGTTCGGTTCGGCCAAGGGGAGCAGGGCAATTTGGTACA 8992 || | || || |||| |||||||||| || || || || ||| ||| ||||||| Sbjct 184844 AGAGAGATAAGAAGCCCAGGGAGTTCGGCAATGCGAAAGGAAGTCGGGTAATCTGGTACA 184903 Query 8993 TGTGGTTAGGCAGCCGGTTCTTGGAGTTTGAGGCCTTGGGGTTCTTGAATGAGGACCACT 9052 ||||| |||| ||||| || ||||| ||||||||| |||| ||| | || ||||| | Sbjct 184904 TGTGGCTAGGAAGCCGTTTTTTGGAATTTGAGGCCCTGGGCTTCCTAAACGAGGATGGAT 184963 Query 9053 GGGCATCAAGGGA 9065 ||||| ||| || Sbjct 184964 GGGCAAAAAGAGA 184976 >seq3275 Length=417686 Score = 84.2 bits (92), Expect = 1e-12 Identities = 171/253 (68%), Gaps = 6/253 (2%) Strand=Plus/Plus Query 8817 GTGGAAAAGTGCCAAAGAGGCTGTCGAGGACCCGGCCTTCTGGAACCTGGTTGATGAAGA 8876 |||| |||| | || ||||| | | ||||| |||||||| | ||||| || || Sbjct 108504 GTGGGAAAGCGGAAACAAGGCTTTGGCCGACCCTAGATTCTGGAAGATTGTTGACGAGGA 108563 Query 8877 ACGGGAGCTCCA---CAGGCAAGGACGTTGTTCCCAATGTGTCTACAACATGATGGGAAA 8933 | | || || || |||| || | || | | || | ||||| | |||||||| Sbjct 108564 AAGAGAACTGCATCTCAGGGGAGAATGTAGG---CTGTGCATGTACAATACAATGGGAAA 108620 Query 8934 GCGTGAGAAAAAGCTTGGGGAGTTCGGTTCGGCCAAGGGGAGCAGGGCAATTTGGTACAT 8993 ||| |||| | | | || || || || || || ||| | | ||||||||||| Sbjct 108621 GCGGGAGATGAGACCCCGAGAATTTGGCAACGCAAAAGGAAGCCGCGTTATTTGGTACAT 108680 Query 8994 GTGGTTAGGCAGCCGGTTCTTGGAGTTTGAGGCCTTGGGGTTCTTGAATGAGGACCACTG 9053 ||||||||| ||| ||||| ||||| |||||| | || || |||||||| ||| || Sbjct 108681 GTGGTTAGGGAGCATATTCTTAGAGTTCGAGGCCCTAGGATTTTTGAATGAAGACGGATG 108740 Query 9054 GGCATCAAGGGAA 9066 |||| ||| ||| Sbjct 108741 GGCAAAAAGAGAA 108753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 33963391912188