Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_007580.2 Length=10940 Score E Sequences producing significant alignments: (Bits) Value seq2801 120 2e-23 seq3275 113 3e-21 >seq2801 Length=191572 Score = 120 bits (132), Expect = 2e-23 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 8949 GCTGTGGAAGATCCAAAGTTCTGGGAAATGGTTGATGAAGAAAGAGAAGCT-CATCTTAA 9007 ||||| | ||| || | |||||| | ||||| ||||| || ||||| ||| || || | Sbjct 184747 GCTGTTGCAGACCCGAGATTCTGGAAGATGGTGGATGAGGAGAGAGA-GCTGCACCTCAG 184805 Query 9008 AGGAGAGTGTCACAC-ATGCATCTACAACATGATGGGGAAGCGTGAGAAAAAGACTGGAG 9066 || ||||| || | |||| | ||||||| |||||||||| | || || ||| | | | Sbjct 184806 GGGTGAGTG-CAGGCTATGCTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGG 184864 Query 9067 AGTTTGGGAAGGCTAAAGGAAGCAGAGCCATTTGGTACATGTGGTTGGGAGCTCGGTTCT 9126 |||| || || || |||||||| | | || |||||||||||| | ||| || || | Sbjct 184865 AGTTCGGCAATGCGAAAGGAAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTT 184924 Query 9127 TGGAGTTTGAAGCCCTTGGGTTCCTAAATGAAGA 9160 |||| ||||| ||||| || |||||||| || || Sbjct 184925 TGGAATTTGAGGCCCTGGGCTTCCTAAACGAGGA 184958 >seq3275 Length=417686 Score = 113 bits (124), Expect = 3e-21 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 8949 GCTGTGGAAGATCCAAAGTTCTGGGAAATGGTTGATGAAGAAAGAGAAGCTCATCTTAAA 9008 ||| ||| || || | |||||| | || ||||| || ||||||||| ||||| | Sbjct 108523 GCTTTGGCCGACCCTAGATTCTGGAAGATTGTTGACGAGGAAAGAGAACTGCATCTCAGG 108582 Query 9009 GGAGAGTGTCACACATGCATCTACAACATGATGGGGAAGCGTGAGAAAAAGACTGGAGAG 9068 ||||| ||| ||||| ||||| | ||||| ||||| |||| | | |||| Sbjct 108583 GGAGAATGTAGGCTGTGCATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAGAA 108642 Query 9069 TTTGGGAAGGCTAAAGGAAGCAGAGCCATTTGGTACATGTGGTT-GGGAGCTCGGTTCTT 9127 ||||| || || ||||||||| | | ||||||||||||||||| |||||| ||||| Sbjct 108643 TTTGGCAACGCAAAAGGAAGCCGCGTTATTTGGTACATGTGGTTAGGGAGC-ATATTCTT 108701 Query 9128 GGAGTTTGAAGCCCTTGGGTTCCTAAATGAAGAC 9161 ||||| || ||||| || || | ||||||||| Sbjct 108702 AGAGTTCGAGGCCCTAGGATTTTTGAATGAAGAC 108735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34881494340256