Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_008718.1 Length=10510 Score E Sequences producing significant alignments: (Bits) Value seq3275 118 7e-23 seq2801 93.3 3e-15 >seq3275 Length=417686 Score = 118 bits (130), Expect = 7e-23 Identities = 196/280 (70%), Gaps = 10/280 (4%) Strand=Plus/Plus Query 8931 TTCTGGGACATGGTTGACAGTGAAAGAGCTTTGCACAAGAAAGGAAAATGCAGGACGTGC 8990 |||||| | || |||||| ||||||| |||| | ||| |||| ||| |||| Sbjct 108541 TTCTGGAAGATTGTTGACGAGGAAAGAGAACTGCATCTCAGGGGAGAATGTAGGCTGTGC 108600 Query 8991 GTGTACAACATGATGGGAAAAAGGGAAAAGAAACCCTCCGAATTCGGGAAAGCAAAAGGG 9050 ||||||| | |||||||| |||| | || |||| ||||| || || |||||||| Sbjct 108601 ATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGGCAACGCAAAAGGA 108660 Query 9051 AGCCGAGCCATATGGTACATGTGGCT-GGGGGCACGCTTCCTGGAGTTTGAAGCCCTAGG 9109 ||||| | || |||||||||||| | ||| ||| ||| | ||||| || |||||||| Sbjct 108661 AGCCGCGTTATTTGGTACATGTGGTTAGGGAGCA-TATTCTTAGAGTTCGAGGCCCTAGG 108719 Query 9110 TTTCTTGAATGAGGACCACTGGATTGCC----AGACGCCACTCTAGAGCAGGAGTGGAAG 9165 || |||||||| ||| |||| | | ||| || || || || ||| || Sbjct 108720 ATTTTTGAATGAAGAC----GGATGGGCAAAAAGAGAAAACACTGGATTTGGGGTGTCAG 108775 Query 9166 GCATTGGACTGCAGTACCTAGGGTATGTGCTGGAAGAACT 9205 | | ||| || | ||||| || ||||| |||||||| || Sbjct 108776 GGCTGGGAGTGAACTACCTGGGTTATGTCCTGGAAGACCT 108815 >seq2801 Length=191572 Score = 93.3 bits (102), Expect = 3e-15 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 8931 TTCTGGGACATGGTTGACAGTGAAAGAGCTTTGCACAAGAAAGGAAAATGCAGGACGTGC 8990 |||||| | ||||| || || |||| ||||| | || | |||||| ||| Sbjct 184765 TTCTGGAAGATGGTGGATGAGGAGAGAGAGCTGCACCTCAGGGGTGAGTGCAGGCTATGC 184824 Query 8991 GTGTACAACATGATGGGAAAAAGGGAAAAGAAACCCTCCGAATTCGGGAAAGCAAAAGGG 9050 ||||||||| |||||| || || || ||||| ||| || ||||| || || ||||| Sbjct 184825 TTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGGAGTTCGGCAATGCGAAAGGA 184884 Query 9051 AGCCGAGCCATATGGTACATGTGGCTGGGGGCACGCTTCCTGGAGTTTGAAGCCCTAGGT 9110 || || | || |||||||||||||| || || || |||| ||||| ||||| || Sbjct 184885 AGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTTTGGAATTTGAGGCCCTGGGC 184944 Query 9111 TTCTTGAATGAGGA 9124 ||| | || ||||| Sbjct 184945 TTCCTAAACGAGGA 184958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 33505940179736