Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_008719.1 Length=10793 Score E Sequences producing significant alignments: (Bits) Value seq2801 118 7e-23 seq3275 80.6 2e-11 >seq2801 Length=191572 Score = 118 bits (130), Expect = 7e-23 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 8889 GCTGTCCAAGACCCACGGTTTTGGAAGCTTGTGGATGAAGAACGGAAACTCCACCTACAA 8948 ||||| |||||| | || |||||| | |||||||| || | | || ||||| Sbjct 184747 GCTGTTGCAGACCCGAGATTCTGGAAGATGGTGGATGAGGAGAGAGAGCTGCACCTCAGG 184806 Query 8949 GGCAAATGCAGGACCTGTGTTTACAACATGATGGGCAAGAGAGAGAAAAAACCTGCTGAG 9008 || | |||||| || | ||||||| |||||| |||||||| || || || ||| Sbjct 184807 GGTGAGTGCAGGCTATGCTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGGAG 184866 Query 9009 TTCGGAAAAGCCAAAGGAAGTAGAGCCATCTGGTACATGTGGCTTGGAGCCCGGTTCCTG 9068 ||||| || || ||||||||| | | ||||||||||||||||| ||| ||| || || Sbjct 184867 TTCGGCAATGCGAAAGGAAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTTTG 184926 Query 9069 GAGTTTGAAGCCCTCGGTTTTCTGAATGAAGAT 9101 || ||||| ||||| || || || || || ||| Sbjct 184927 GAATTTGAGGCCCTGGGCTTCCTAAACGAGGAT 184959 >seq3275 Length=417686 Score = 80.6 bits (88), Expect = 2e-11 Identities = 144/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 8898 GACCCACGGTTTTGGAAGCTTGTGGATGAAGAACGGAAACTCCACCTACAAGGCA-AATG 8956 ||||| | || |||||| |||| || || ||| | |||| || || || || | |||| Sbjct 108532 GACCCTAGATTCTGGAAGATTGTTGACGAGGAAAGAGAACTGCATCT-CAGGGGAGAATG 108590 Query 8957 CAGGACCTGTG--TTTACAACATGATGGGCAAGAGAGAGAAAAAACCTGCTGAGTTCGGA 9014 ||| ||||| | ||||| | ||||| ||| | |||| | ||| || || || Sbjct 108591 TAGG--CTGTGCATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGGC 108648 Query 9015 AAAGCCAAAGGAAGTAGAGCCATCTGGTACATGTGGCTTGGAGCCCGGTTCCTGGAGTTT 9074 || || |||||||| | | || |||||||||||| | || | ||| | ||||| Sbjct 108649 AACGCAAAAGGAAGCCGCGTTATTTGGTACATGTGGTTAGGGAGCATATTCTTAGAGTTC 108708 Query 9075 GAAGCCCTCGGTTTTCTGAATGAAGA 9100 || ||||| || ||| |||||||||| Sbjct 108709 GAGGCCCTAGGATTTTTGAATGAAGA 108734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34411246755148