Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_009028.2 Length=10755 Score E Sequences producing significant alignments: (Bits) Value seq2801 104 2e-18 seq3275 91.5 1e-14 >seq2801 Length=191572 Score = 104 bits (114), Expect = 2e-18 Identities = 118/158 (75%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 8999 ATGCATCTACAACATGATGGGAAAGCGAGAGAAAAAACTAGGAGAGTTCGGGAAGGCAAA 9058 |||| | ||||||| |||||| ||| |||| || || | | |||||||| || || || Sbjct 184821 ATGCTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGGAGTTCGGCAATGCGAA 184880 Query 9059 GGGAAGCAGAGCCATCTGGTACATGTGGCTTGGAGCTAGATTCTTGGAATTTGAAGCACT 9118 ||||| | | ||||||||||||||||| ||| | || ||||||||||| || || Sbjct 184881 AGGAAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTTTGGAATTTGAGGCCCT 184940 Query 9119 GGGCTTTCTAAATGAAGACCATTGGATGAGCAGAGAGA 9156 |||||| ||||| || || |||||| ||| | ||| Sbjct 184941 GGGCTTCCTAAACGAGGA----TGGATGGGCAAAAAGA 184974 >seq3275 Length=417686 Score = 91.5 bits (100), Expect = 1e-14 Identities = 124/169 (73%), Gaps = 8/169 (5%) Strand=Plus/Plus Query 9000 TGCATCTACAACATGATGGGAAAGCGAGAGAAAAAACTAGGAGAGTTCGGGAAGGCAAAG 9059 ||||| ||||| | ||||||||||| |||| | || |||| || || || ||||| Sbjct 108598 TGCATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGGCAACGCAAAA 108657 Query 9060 GGAAGCAGAGCCATCTGGTACATGTGGCT-TGGAGCTAGATTCTTGGAATTTGAAGCACT 9118 |||||| | | || |||||||||||| | ||||| | |||||| || || || || || Sbjct 108658 GGAAGCCGCGTTATTTGGTACATGTGGTTAGGGAGC-ATATTCTTAGAGTTCGAGGCCCT 108716 Query 9119 GGGCTTTCTAAATGAAGACCATTGGATGAGC--AGAGAGAACTCACTGG 9165 || ||| | ||||||||| ||||| || | |||||| |||||| Sbjct 108717 AGGATTTTTGAATGAAGAC----GGATGGGCAAAAAGAGAAAACACTGG 108761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34289686154916