Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_009942.1 Length=11029 Score E Sequences producing significant alignments: (Bits) Value seq2801 131 1e-26 seq3275 98.7 7e-17 >seq2801 Length=191572 Score = 131 bits (144), Expect = 1e-26 Identities = 193/267 (72%), Gaps = 15/267 (6%) Strand=Plus/Plus Query 8959 GCAGTTGAAGATCCAAAATTTTGGGAGATGGTGGATGAGGAGCGCGAGGCACATCTGCGG 9018 || |||| ||| || | ||| ||| ||||||||||||||||| | ||| || || || Sbjct 184747 GCTGTTGCAGACCCGAGATTCTGGAAGATGGTGGATGAGGAGAGAGAGCTGCACCTCAGG 184806 Query 9019 GGGGAATGTCACACT-TGCATTTACAACATGATGGGAAAGAGAGAGAAAAAACCCGGAGA 9077 || || || || || ||| | ||||||| |||||| |||||||| || || ||| | || Sbjct 184807 GGTGAGTG-CAGGCTATGCTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGGA 184865 Query 9078 GTTCGGAAAGGCCAAGGGAAGCAGAGCCATTTGGTTCATGTGGCTCGGAGCTCGCTTTCT 9137 |||||| || || || ||||| | | || |||| ||||||||| ||| || ||| | Sbjct 184866 GTTCGGCAATGCGAAAGGAAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTTT 184925 Query 9138 GGAGTTCGAGGCTCTGGGTTTTCTCAATGAAGACCACTGGCTTGG----AAGAAAGAACT 9193 ||| || ||||| ||||| || || || || || ||| | || |||| |||| Sbjct 184926 GGAATTTGAGGCCCTGGGCTTCCTAAACGAGGA----TGGATGGGCAAAAAGAGAGAAAA 184981 Query 9194 CAGGA---GGAGGTGTCGAGGGCTTGG 9217 ||||| ||| ||||| |||||| || Sbjct 184982 CAGGATTTGGA-GTGTC-AGGGCTGGG 185006 >seq3275 Length=417686 Score = 98.7 bits (108), Expect = 7e-17 Identities = 195/280 (70%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 8968 GATCCAAAATTTTGGGAGATGGTGGATGAGGAGCGCGAGGCACATCTGCGGGGGGAATGT 9027 || || | ||| ||| |||| || || ||||| | || ||||| |||| |||||| Sbjct 108532 GACCCTAGATTCTGGAAGATTGTTGACGAGGAAAGAGAACTGCATCTCAGGGGAGAATGT 108591 Query 9028 CACACT-TGCATTTACAACATGATGGGAAAGAGAGAGAAAAAACCCGGAGAGTTCGGAAA 9086 | || ||||| ||||| | ||||||||| | |||| | |||| |||| || || || Sbjct 108592 -AGGCTGTGCATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGGCAA 108650 Query 9087 GGCCAAGGGAAGCAGAGCCATTTGGTTCATGTGGCTCGGAGCTCGCTTTCTG-GAGTTCG 9145 || || |||||| | | ||||||| ||||||| | || | | |||| ||||||| Sbjct 108651 CGCAAAAGGAAGCCGCGTTATTTGGTACATGTGGTTAGG-GAGCATATTCTTAGAGTTCG 108709 Query 9146 AGGCTCTGGGTTTTCTCAATGAAGACCACTGGCTTGGAAGAAAGAACTCAGGA--GGAGG 9203 |||| || || ||| | ||||||||| ||| |||| | ||| | ||| | || Sbjct 108710 AGGCCCTAGGATTTTTGAATGAAGACGGATGGGCAAAAAGAGAAAACACTGGATTTGGGG 108769 Query 9204 TGTCGAGGGCTTGGGCCTCCAAAAACTGGGTTACATCCTG 9243 |||| ||||| |||| | | | |||||||| ||||| Sbjct 108770 TGTC-AGGGC-TGGGAGTGAACTACCTGGGTTATGTCCTG 108807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35166202061852