Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_012532.1 Length=10794 Score E Sequences producing significant alignments: (Bits) Value seq2801 141 6e-30 seq3275 122 6e-24 >seq2801 Length=191572 Score = 141 bits (156), Expect = 6e-30 Identities = 178/240 (74%), Gaps = 12/240 (5%) Strand=Plus/Plus Query 8960 GTGGATAGGGAGAGAGAACACCACCTGAGAGGAGAGTGTCACAGCTGTG--TGTACAACA 9017 |||||| ||||||||| | ||||| || || ||||| || ||| || ||||||||| Sbjct 184777 GTGGATGAGGAGAGAGAGCTGCACCTCAGGGGTGAGTG-CAG-GCTATGCTTGTACAACA 184834 Query 9018 TGATGGGAAAAAGAGAAAAGAAGCAAGGAGAGTTCGGGAAAGCAAAAGGTAGCCGCGCCA 9077 |||||| || ||||| ||||||| | |||||||| || || ||||| || || | | Sbjct 184835 CGATGGGGAAGAGAGATAAGAAGCCCAGGGAGTTCGGCAATGCGAAAGGAAGTCGGGTAA 184894 Query 9078 TCTGGTACATGTGGTTGGGAGCCAGATTCTTGGAGTTTGAAGCCCTTGGATTCTTGAACG 9137 |||||||||||||| | ||| | | || ||||| ||||| ||||| || ||| | |||| Sbjct 184895 TCTGGTACATGTGGCTAGGAAGCCGTTTTTTGGAATTTGAGGCCCTGGGCTTCCTAAACG 184954 Query 9138 AGGACCATTGGATGGG----AAGAGAAAACTCAGGAGGTGGAGTCGAAGGGTTAGGATTG 9193 |||| |||||||| |||||| || ||||| |||||| |||| | ||| || Sbjct 184955 AGGA----TGGATGGGCAAAAAGAGAGAAAACAGGATTTGGAGTGTCAGGGCTGGGAGTG 185010 >seq3275 Length=417686 Score = 122 bits (134), Expect = 6e-24 Identities = 170/233 (73%), Gaps = 14/233 (6%) Strand=Plus/Plus Query 8968 GGAGAGAGAACACCACCTGAGAGGAGAGTGTCACAGCTGTG--TGTACAACATGATGGGA 9025 ||| ||||||| || || || ||||| ||| |||||| ||||||| | |||||| Sbjct 108561 GGAAAGAGAACTGCATCTCAGGGGAGAATGTAG--GCTGTGCATGTACAATACAATGGGA 108618 Query 9026 AAAAGAGAAAAGAAGCAAGGAGAGTTCGGGAAAGCAAAAGGTAGCCGCGCCATCTGGTAC 9085 || | || | || | |||| || || || |||||||| ||||||| || |||||| Sbjct 108619 AAGCGGGAGATGAGACCCCGAGAATTTGGCAACGCAAAAGGAAGCCGCGTTATTTGGTAC 108678 Query 9086 ATGTGGTT-GGGAGCCAGATTCTTGGAGTTTGAAGCCCTTGGATTCTTGAACGAGGACCA 9144 |||||||| ||||| || |||||| ||||| || ||||| ||||| ||||| || ||| Sbjct 108679 ATGTGGTTAGGGAG-CATATTCTTAGAGTTCGAGGCCCTAGGATTTTTGAATGAAGAC-- 108735 Query 9145 TTGGATGGG----AAGAGAAAACTCAGGAGGTGGAGTCGAAGGGTTAGGATTG 9193 ||||||| |||||||||| | ||| ||| || |||| | ||| || Sbjct 108736 --GGATGGGCAAAAAGAGAAAACACTGGATTTGGGGTGTCAGGGCTGGGAGTG 108786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34414445718312