Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_012533.1 Length=10723 Score E Sequences producing significant alignments: (Bits) Value seq2801 131 1e-26 seq3275 104 2e-18 >seq2801 Length=191572 Score = 131 bits (144), Expect = 1e-26 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 8903 GCAGTGGAAGATCCAAAGTTCTGGAGGCTAGTGGATGAAGAGAGGGAGCTGCACAAACAA 8962 || || | ||| || | ||||||| | | |||||||| ||||| ||||||||| Sbjct 184747 GCTGTTGCAGACCCGAGATTCTGGAAGATGGTGGATGAGGAGAGAGAGCTGCACCTCAGG 184806 Query 8963 GGTAGGTGCAGGACCTGTGTGTACAACATGATGGGAAAAAGAGAGAAAAAGACCTCAGAA 9022 ||| ||||||| || ||||||||| |||||| || ||||| || ||| || || Sbjct 184807 GGTGAGTGCAGGCTATGCTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGGAG 184866 Query 9023 TTTGGGAAAGCGAAAGGCAGCAGGGCTATCTGGTACATGTGGCTGGGAGCTAGATTCTTA 9082 || || || |||||||| || ||| ||||||||||||||||| ||| | || || Sbjct 184867 TTCGGCAATGCGAAAGGAAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTTTG 184926 Query 9083 GAGTTTGAAGCCCTCGGCTTCCTGAATGAGGA 9114 || ||||| ||||| |||||||| || ||||| Sbjct 184927 GAATTTGAGGCCCTGGGCTTCCTAAACGAGGA 184958 >seq3275 Length=417686 Score = 104 bits (114), Expect = 2e-18 Identities = 162/222 (73%), Gaps = 10/222 (5%) Strand=Plus/Plus Query 8921 TTCTGGAGGCTAGTGGATGAAGAGAGGGAGCTGCACAAACAAGGTAGG-TGCAGGACCTG 8979 ||||||| | | || || || || || || ||||| || || || || ||| ||| Sbjct 108541 TTCTGGAAGATTGTTGACGAGGAAAGAGAACTGCATCT-CAGGGGAGAATGTAGG--CTG 108597 Query 8980 TG--TGTACAACATGATGGGAAAAAGAGAGAAAAAGACCTC-AGAATTTGGGAAAGCGAA 9036 || ||||||| | |||||||| | |||| | |||| | ||||||||| || || || Sbjct 108598 TGCATGTACAATACAATGGGAAAGCGGGAGATGA-GACCCCGAGAATTTGGCAACGCAAA 108656 Query 9037 AGGCAGCAGGGCTATCTGGTACATGTGGCT-GGGAGCTAGATTCTTAGAGTTTGAAGCCC 9095 ||| ||| | | ||| |||||||||||| | |||||| | |||||||||||| || |||| Sbjct 108657 AGGAAGCCGCGTTATTTGGTACATGTGGTTAGGGAGC-ATATTCTTAGAGTTCGAGGCCC 108715 Query 9096 TCGGCTTCCTGAATGAGGACCACTGGTTCAGCAGAGAAAACA 9137 | || || ||||||| ||| ||| | |||||||||| Sbjct 108716 TAGGATTTTTGAATGAAGACGGATGGGCAAAAAGAGAAAACA 108757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34187319333668