Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_012534.1 Length=10941 Score E Sequences producing significant alignments: (Bits) Value seq2801 123 2e-24 seq3275 93.3 3e-15 >seq2801 Length=191572 Score = 123 bits (136), Expect = 2e-24 Identities = 161/223 (72%), Gaps = 10/223 (4%) Strand=Plus/Plus Query 8954 TTTTGGGAGTTGGTGGATCAGGAACGCGAGGCGCACCTTCAAGGAAAGTGTGAGACATGC 9013 || ||| || |||||||| |||| | ||| |||||| || |||| | |||| Sbjct 184765 TTCTGGAAGATGGTGGATGAGGAGAGAGAGCTGCACCTCAGGGGTGAGTGCAGGCTATGC 184824 Query 9014 ATCTACAACATGATGGGAAAGAGAGAAAAGAAAATGGGAGAATTTGGCAAAGCAAAAGGA 9073 | ||||||| |||||| |||||||| ||||| | || || ||||| || |||||| Sbjct 184825 TTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGGAGTTCGGCAATGCGAAAGGA 184884 Query 9074 AGCAGGGCCATATGGTATATGTGGCTCGGATCCCGGTTCTTAGAATTTGAGGCCCTTGGG 9133 || ||| || ||||| |||||||| ||| ||| || || |||||||||||||| || Sbjct 184885 AGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTTTGGAATTTGAGGCCCTGGGC 184944 Query 9134 TTTCTGAACGAGGATCACTGGATGAGC------AGAGAAAACA 9170 || || |||||||| |||||| || |||||||||| Sbjct 184945 TTCCTAAACGAGGA----TGGATGGGCAAAAAGAGAGAAAACA 184983 >seq3275 Length=417686 Score = 93.3 bits (102), Expect = 3e-15 Identities = 120/165 (73%), Gaps = 8/165 (5%) Strand=Plus/Plus Query 9011 TGCATCTACAACATGATGGGAAAGAGAGAAAAGAAAATGGGAGAATTTGGCAAAGCAAAA 9070 ||||| ||||| | ||||||||| | || | || | ||||||||||||| |||||| Sbjct 108598 TGCATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGGCAACGCAAAA 108657 Query 9071 GGAAGCAGGGCCATATGGTATATGTGGCTCGGATCCCGGTTCTTAGAATTTGAGGCCCTT 9130 |||||| | | || ||||| |||||| | || | |||||||| || |||||||| Sbjct 108658 GGAAGCCGCGTTATTTGGTACATGTGGTTAGGGAGCATATTCTTAGAGTTCGAGGCCCTA 108717 Query 9131 GGGTTTCTGAACGAGGATCACTGGATGAGC----AGAGAAAACAC 9171 || ||| |||| || || ||||| || ||||||||||| Sbjct 108718 GGATTTTTGAATGAAGA----CGGATGGGCAAAAAGAGAAAACAC 108758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34884693303420