Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_012735.1 Length=10814 Score E Sequences producing significant alignments: (Bits) Value seq2801 118 7e-23 seq3275 107 1e-19 >seq2801 Length=191572 Score = 118 bits (130), Expect = 7e-23 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 8873 TGGAAGAGTGCAAGTGAGGCTGTCCAGGATCCACAGTTCTGGAAACTGGTTGATGATGAG 8932 ||| ||| ||||| ||||||| || || |||||||| |||| ||||| ||| Sbjct 184729 TGGGAGAATGCAAACAAGGCTGTTGCAGACCCGAGATTCTGGAAGATGGTGGATGAGGAG 184788 Query 8933 AGGAAGCTGCATCTGCAAGGCCAATGCCGGACATGTGTGTACAACATGATGGGGAAACGT 8992 || ||||||| || || | ||| || ||| ||||||||| ||||||||| | Sbjct 184789 AGAGAGCTGCACCTCAGGGGTGAGTGCAGGCTATGCTTGTACAACACGATGGGGAAGAGA 184848 Query 8993 GAAAAGAAACCCTCTGAATTTGGCAAAGCAAAGGGAAGCAGGGCGATCTGGTACATGTGG 9052 || ||||| ||| || || ||||| || || ||||| ||| ||||||||||||||| Sbjct 184849 GATAAGAAGCCCAGGGAGTTCGGCAATGCGAAAGGAAGTCGGGTAATCTGGTACATGTGG 184908 Query 9053 CTAGGAGCTAGATTCCTTGAGTTTGAAGCACTGGGATTCTTAAATGAAGA 9102 |||||| | || | || ||||| || ||||| ||| |||| || || Sbjct 184909 CTAGGAAGCCGTTTTTTGGAATTTGAGGCCCTGGGCTTCCTAAACGAGGA 184958 >seq3275 Length=417686 Score = 107 bits (118), Expect = 1e-19 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 8909 TTCTGGAAACTGGTTGATGATGAGAGGAAGCTGCATCTGCAAGGCCAATGCCGGACATGT 8968 |||||||| | ||||| || || || | |||||||| || |||| || || Sbjct 108541 TTCTGGAAGATTGTTGACGAGGAAAGAGAACTGCATCTCAGGGGAGAATGTAGGCTGTGC 108600 Query 8969 GTGTACAACATGATGGGGAAACGTGAAAAGAAACCCTCTGAATTTGGCAAAGCAAAGGGA 9028 ||||||| | ||||| || || || | || |||| ||||||||||| ||||| ||| Sbjct 108601 ATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGGCAACGCAAAAGGA 108660 Query 9029 AGCAGGGCGATCTGGTACATGTGGCTA-GGAGCTAGATTCCTTGAGTTTGAAGCACTGGG 9087 ||| | | || |||||||||||| || ||||| | |||| | ||||| || || || || Sbjct 108661 AGCCGCGTTATTTGGTACATGTGGTTAGGGAGC-ATATTCTTAGAGTTCGAGGCCCTAGG 108719 Query 9088 ATTCTTAAATGAAGAC 9103 ||| || ||||||||| Sbjct 108720 ATTTTTGAATGAAGAC 108735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34478424981592