Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_015843.2 Length=10990 Score E Sequences producing significant alignments: (Bits) Value seq3275 107 1e-19 seq2801 102 6e-18 >seq3275 Length=417686 Score = 107 bits (118), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 8961 TTGTTGACAGAGAGAGAGAACTGCACCTGCAAGGGA-AGTGTGAGACCTGCATTTACAAC 9019 |||||||| || ||||||||||| || || |||| | ||| | ||||| ||||| Sbjct 108551 TTGTTGACGAGGAAAGAGAACTGCATCT-CAGGGGAGAATGTAGGCTGTGCATGTACAAT 108609 Query 9020 ATGATGGGAAAGCGAGAAAAGAAGATGGGAGAGTTCGGGAAAGCAAAAGGTAGTAGAGCT 9079 | ||||||||||| || | || |||| || || || |||||||| || | | | Sbjct 108610 ACAATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGGCAACGCAAAAGGAAGCCGCGTT 108669 Query 9080 ATTTGGTACATGTGGCTCGGGGCCAGATTCCTAGAGTTCGAAGCCTTGGGCTTCTTGAAC 9139 ||||||||||||||| | ||| || |||| |||||||||| ||| | || || ||||| Sbjct 108670 ATTTGGTACATGTGGTTAGGGAGCATATTCTTAGAGTTCGAGGCCCTAGGATTTTTGAAT 108729 Query 9140 GAGGATCACTGGATGAGC----AGGGAAAACACT 9169 || || ||||| || || ||||||||| Sbjct 108730 GAAGA----CGGATGGGCAAAAAGAGAAAACACT 108759 >seq2801 Length=191572 Score = 102 bits (112), Expect = 6e-18 Identities = 129/175 (74%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 8972 GAGAGAGAACTGCACCTGCAAGGGA-AGTGTGAGACCTGCATTTACAACATGATGGGAAA 9030 |||||||| |||||||| || ||| |||| | ||| | ||||||| |||||| || Sbjct 184786 GAGAGAGAGCTGCACCT-CAGGGGTGAGTGCAGGCTATGCTTGTACAACACGATGGGGAA 184844 Query 9031 GCGAGAAAAGAAGATGGGAGAGTTCGGGAAAGCAAAAGGTAGTAGAGCTATTTGGTACAT 9090 | |||| |||||| | |||||||| || || ||||| ||| | | || |||||||| Sbjct 184845 GAGAGATAAGAAGCCCAGGGAGTTCGGCAATGCGAAAGGAAGTCGGGTAATCTGGTACAT 184904 Query 9091 GTGGCTCGGGGCCAGATTCCTAGAGTTCGAAGCCTTGGGCTTCTTGAACGAGGAT 9145 |||||| || | | || | || || || ||| |||||||| | ||||||||| Sbjct 184905 GTGGCTAGGAAGCCGTTTTTTGGAATTTGAGGCCCTGGGCTTCCTAAACGAGGAT 184959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35041442498456