Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_016997.1 Length=10791 Score E Sequences producing significant alignments: (Bits) Value seq2801 114 9e-22 seq3275 80.6 2e-11 >seq2801 Length=191572 Score = 114 bits (126), Expect = 9e-22 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 9003 GCTGTGAGAGATCCACGCTTCTGGAAGCTGGTTGATGCTGAGAGAGAGGAACATCTCCAG 9062 ||||| ||| || | ||||||||| |||| |||| ||||||||| || ||| | Sbjct 184747 GCTGTTGCAGACCCGAGATTCTGGAAGATGGTGGATGAGGAGAGAGAGCTGCACCTCAGG 184806 Query 9063 GGCCGGTGCACAACATGCATTTACAACATGATGGGTAAGAGAGAGAAGAAAAGCACTGAA 9122 || ||||| |||| | ||||||| |||||| |||||||| ||||| || || Sbjct 184807 GGTGAGTGCAGGCTATGCTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGGAG 184866 Query 9123 TTTGGAAGGGCGAAAGGCAGCCGAGCCATCTGGTTCATGTGGCTAGGGGCTCGATACCTT 9182 || || | |||||||| || || | ||||||| |||||||||||| || | | Sbjct 184867 TTCGGCAATGCGAAAGGAAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTTTG 184926 Query 9183 GAGTTCGAGGCCTTAGGCTTCCTGAATGAGGAT 9215 || || |||||| | |||||||| || |||||| Sbjct 184927 GAATTTGAGGCCCTGGGCTTCCTAAACGAGGAT 184959 >seq3275 Length=417686 Score = 80.6 bits (88), Expect = 2e-11 Identities = 134/194 (69%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 9021 TTCTGGAAGCTGGTTGATGCTGAGAGAGAGGAACATCTCCAGGGCCGGTGCACAACATGC 9080 ||||||||| | ||||| | || ||||| |||||| ||| || | ||| Sbjct 108541 TTCTGGAAGATTGTTGACGAGGAAAGAGAACTGCATCTCAGGGGAGAATGTAGGCTGTGC 108600 Query 9081 ATTTACAACATGATGGGTAAGAGAGAGAAGAAAAGCACTGAATTTGGAAGGGCGAAAGGC 9140 || ||||| | ||||| ||| | |||| || | | |||||||| | || ||||| Sbjct 108601 ATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGGCAACGCAAAAGGA 108660 Query 9141 AGCCGAGCCATCTGGTTCATGTGGCTAGGGGCTCGATACCTTGAGTTCGAGGCCTTAGGC 9200 ||||| | || |||| ||||||| ||||| || | | |||||||||||| |||| Sbjct 108661 AGCCGCGTTATTTGGTACATGTGGTTAGGGAGCATATTCTTAGAGTTCGAGGCCCTAGGA 108720 Query 9201 TTCCTGAATGAGGA 9214 || ||||||| || Sbjct 108721 TTTTTGAATGAAGA 108734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34404848828820