Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_018705.3 Length=10943 Score E Sequences producing significant alignments: (Bits) Value seq3275 87.8 1e-13 seq2801 86.0 4e-13 >seq3275 Length=417686 Score = 87.8 bits (96), Expect = 1e-13 Identities = 156/224 (70%), Gaps = 8/224 (4%) Strand=Plus/Plus Query 8957 TTCTGGGAAATGGTGGACAGAGAAAGAGAAGCCCATCTACAAGGACGATGTGAAATGTGT 9016 |||||| | || || ||| ||||||||| ||||| ||| |||| |||| Sbjct 108541 TTCTGGAAGATTGTTGACGAGGAAAGAGAACTGCATCTCAGGGGAGAATGTAGGCTGTGC 108600 Query 9017 ACATACAACATGATGGGAAAACGCGAGAAGAAGATGGGTGAATTTGGAAAAGCAAAAGGT 9076 | ||||| | |||||||| || |||| || | |||||||| || |||||||| Sbjct 108601 ATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGGCAACGCAAAAGGA 108660 Query 9077 AGCCGGGCCATCTGGTACATGTGGTTAGGTTCAAGATATCTT-GAATTTGAAGCTCTGGG 9135 ||||| | || ||||||||||||||||| | || |||| || || || || || || Sbjct 108661 AGCCGCGTTATTTGGTACATGTGGTTAGGGAGCATAT-TCTTAGAGTTCGAGGCCCTAGG 108719 Query 9136 GTTCTTAAACGAAGACCATTGGATGAGC--AGAGAGAACACACT 9177 || || || |||||| ||||| || | |||||| ||||| Sbjct 108720 ATTTTTGAATGAAGAC----GGATGGGCAAAAAGAGAAAACACT 108759 >seq2801 Length=191572 Score = 86.0 bits (94), Expect = 4e-13 Identities = 148/210 (70%), Gaps = 14/210 (7%) Strand=Plus/Plus Query 9020 TACAACATGATGGGAAAACGCGAGAAGAAGATGGGTGAATTTGGAAAAGCAAAAGGTAGC 9079 ||||||| |||||| || | || |||||| | || || || || || ||||| || Sbjct 184828 TACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGGAGTTCGGCAATGCGAAAGGAAGT 184887 Query 9080 CGGGCCATCTGGTACATGTGGTTAGGTTCAAGATATCTTGAATTTGAAGCTCTGGGGTTC 9139 |||| ||||||||||||||| |||| | | | | |||||||| || ||||| ||| Sbjct 184888 CGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTTTGGAATTTGAGGCCCTGGGCTTC 184947 Query 9140 TTAAACGAAGACCATTGGATGAGC----AGAGAGAACAC---ACTTGGAGGAGTCGAGGG 9192 ||||||| || |||||| || |||||||| || | ||||| | ||| |||| Sbjct 184948 CTAAACGAGGA----TGGATGGGCAAAAAGAGAGAAAACAGGATTTGGA-GTGTC-AGGG 185001 Query 9193 CTTAGGCCTGCAGAAGCTTGGATACGTGCT 9222 | | || || | | || ||||| ||||| Sbjct 185002 C-TGGGAGTGAATTATCTAGGATATGTGCT 185030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34891091229748