Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_023439.1 Length=10688 Score E Sequences producing significant alignments: (Bits) Value seq2801 129 4e-26 seq3275 91.5 1e-14 >seq2801 Length=191572 Score = 129 bits (142), Expect = 4e-26 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 8964 GCAGTTGAGGACCCTCAGTTCTGGAAGATGGTTGATGATGAACGGGAGTTACACTTGAAG 9023 || |||| ||||| |||||||||||||| ||||| || | ||| | ||| | | | Sbjct 184747 GCTGTTGCAGACCCGAGATTCTGGAAGATGGTGGATGAGGAGAGAGAGCTGCACCTCAGG 184806 Query 9024 GGAAAGTGC--GCCACTTGTGTCTACAACATGATGGGGAAACGCGAGAAGAAGGCCGGTG 9081 || ||||| || | || | ||||||| ||||||||| | || |||||| || | | Sbjct 184807 GGTGAGTGCAGGCTA--TGCTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGG 184864 Query 9082 AGTTCGGCAGGGCCAAGGGTAGCAGGGCTATCTGGTACATGTGGCTGGGCAGCCGCTTCC 9141 ||||||||| || || || || ||| ||||||||||||||||| || ||||| || Sbjct 184865 AGTTCGGCAATGCGAAAGGAAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTT 184924 Query 9142 TTGAGTTTGAGGCCCTGGGGTTTTTGAATGAGGA 9175 | || |||||||||||||| || | || ||||| Sbjct 184925 TGGAATTTGAGGCCCTGGGCTTCCTAAACGAGGA 184958 >seq3275 Length=417686 Score = 91.5 bits (100), Expect = 1e-14 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 8973 GACCCTCAGTTCTGGAAGATGGTTGATGATGAACGGGAGTTACACTTGAAGGGAAAGTGC 9032 |||||| ||||||||||| ||||| || ||| | || | || | | |||| | || Sbjct 108532 GACCCTAGATTCTGGAAGATTGTTGACGAGGAAAGAGAACTGCATCTCAGGGGAGAATGT 108591 Query 9033 -GCCACTTGTG--TCTACAACATGATGGGGAAACGCGAGAAGAAGGCCGGTGAGTTCGGC 9089 | | |||| | ||||| | ||||| || || |||| || || | || || ||| Sbjct 108592 AGGC---TGTGCATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGGC 108648 Query 9090 AGGGCCAAGGGTAGCAGGGCTATCTGGTACATGTGGCTGGGCAGCCGCTTCCTTGAGTTT 9149 | || || || ||| | | ||| |||||||||||| | || ||| ||| | ||||| Sbjct 108649 AACGCAAAAGGAAGCCGCGTTATTTGGTACATGTGGTTAGGGAGCATATTCTTAGAGTTC 108708 Query 9150 GAGGCCCTGGGGTTTTTGAATGAGGACCACTGGGC 9184 |||||||| || ||||||||||| ||| ||||| Sbjct 108709 GAGGCCCTAGGATTTTTGAATGAAGACGGATGGGC 108743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34075355622928