Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_024299.2 Length=10878 Score E Sequences producing significant alignments: (Bits) Value seq3275 113 3e-21 >seq3275 Length=417686 Score = 113 bits (124), Expect = 3e-21 Identities = 200/292 (68%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 8740 AGGCTTTGGCGGACCCCCGGTTTTGGGAACTGGTTGATAGAGAAAGGAAGTTGCATCTCC 8799 |||||||||| ||||| | || ||| | | ||||| ||||| | |||||||| Sbjct 108521 AGGCTTTGGCCGACCCTAGATTCTGGAAGATTGTTGACGAGGAAAGAGAACTGCATCTCA 108580 Query 8800 AAGGAGACTGTGAGCTTTGCGTGTACAACACAATGGGGAAGAAGGAGAAAAAACCCTCAG 8859 ||||| ||| ||| ||| ||||||| |||||||| ||| ||||| | |||| || Sbjct 108581 GGGGAGAATGTAGGCTGTGCATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAG 108640 Query 8860 TGTGTGGAGAGGCAAAAGGCTCACGCACGATTTGGTATATGTGGCTTGGATGCCGTTTCC 8919 | ||| | |||||||| ||| |||||||| |||||| | || || ||| Sbjct 108641 AATTTGGCAACGCAAAAGGAAGCCGCGTTATTTGGTACATGTGGTTAGGGAGCATATTCT 108700 Query 8920 TAGAATACGAGGCTTTAGGCTTTTTGAACGAAGATCACTGGGTTTCTCGCGAGTACCTTC 8979 |||| | |||||| |||| |||||||| ||||| |||| | || || | Sbjct 108701 TAGAGTTCGAGGCCCTAGGATTTTTGAATGAAGACGGATGGGCAAAAAGAGAAAACACTG 108760 Query 8980 CATGTGGAGTGGGCGGAATAGGAGTGAACTACTTCGGTTATTATCTGGAAGA 9031 || ||| ||| || | |||||||||||| | |||||| |||||||| Sbjct 108761 GATTTGGGGTGTCAGGGCTGGGAGTGAACTACCTGGGTTATGTCCTGGAAGA 108812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34683158624088