Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_024805.1 Length=10365 Score E Sequences producing significant alignments: (Bits) Value seq3275 84.2 1e-12 >seq3275 Length=417686 Score = 84.2 bits (92), Expect = 1e-12 Identities = 142/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 9007 ATGGGCAAACGCGAGAAGAAAAGCACTGAATTTGGCAAAGCTAAGGGAAGCCGAGCTATA 9066 ||||| || || |||| || | | ||||||||||| || || |||||||| | ||| Sbjct 108613 ATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGGCAACGCAAAAGGAAGCCGCGTTATT 108672 Query 9067 TGGTTCATGTGGTTA-GGAGCCCGATAT--CTGGAATTTGAAGCGCTCGGTTTTTTGAAT 9123 |||| |||||||||| ||||| |||| | || || || || || || ||||||||| Sbjct 108673 TGGTACATGTGGTTAGGGAGC---ATATTCTTAGAGTTCGAGGCCCTAGGATTTTTGAAT 108729 Query 9124 GAAGATCATTGGTTATCGCGTGAGAACTCTGGTGGAGGAGTAGAAGGAATCGGATTGCAA 9183 ||||| ||| | | || ||| |||| || || ||| | ||| || | Sbjct 108730 GAAGACGGATGGGCAAAAAGAGAAAACACTGGATTTGGGGTGTCAGGGCTGGGAGTGAAC 108789 Query 9184 TACCTGGGGAATGTTCTGGAAGA 9206 |||||||| |||| |||||||| Sbjct 108790 TACCTGGGTTATGTCCTGGAAGA 108812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 33042090520956