Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_026623.1 Length=10284 Score E Sequences producing significant alignments: (Bits) Value seq3275 109 4e-20 >seq3275 Length=417686 Score = 109 bits (120), Expect = 4e-20 Identities = 203/295 (69%), Gaps = 10/295 (3%) Strand=Plus/Plus Query 8854 GACCCTGAGTTTTGGAGACTTGTTGATGAAGAAAGAGAAAACCATCTAAAAGGAGAATGC 8913 |||||| || |||| ||||||| || ||||||||| ||||| | |||||||| Sbjct 108532 GACCCTAGATTCTGGAAGATTGTTGACGAGGAAAGAGAACTGCATCTCAGGGGAGAATGT 108591 Query 8914 CACACCTGCATATACAACATGATGGGAAAGAGAGAAAAGAAACCTGGCGAATTTGGGAAA 8973 ||||| ||||| | ||||||||| | || | || ||| | |||||||| || Sbjct 108592 AGGCTGTGCATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGGCAAC 108651 Query 8974 GCCAAAGGGAGTCGAGCCATCTGGTTCATGTGGCTCGG-AGCAAGGTTTCTCGAGTTTGA 9032 || ||||| || || | || |||| ||||||| | || |||| | | | ||||| || Sbjct 108652 GCAAAAGGAAGCCGCGTTATTTGGTACATGTGGTTAGGGAGCATATTCT-TAGAGTTCGA 108710 Query 9033 AGCCTTGGGATTCTTGAATGAAGACCATTGGATGAGC----AGGGAGAACTCTGGAGGTG 9088 ||| | ||||| |||||||||||| ||||| || || || ||| ||||| || Sbjct 108711 GGCCCTAGGATTTTTGAATGAAGAC----GGATGGGCAAAAAGAGAAAACACTGGATTTG 108766 Query 9089 GAGTGGAAGGCTTAGGCGTCCAAAAGCTGGGTTACATTCTGAGAGAGCTGGGAGA 9143 | ||| ||| | || || | | |||||||| | ||| ||| || |||| Sbjct 108767 GGGTGTCAGGGCTGGGAGTGAACTACCTGGGTTATGTCCTGGAAGACCTAAGAGA 108821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32782974504672