Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_027709.1 Length=10870 Score E Sequences producing significant alignments: (Bits) Value seq2801 147 2e-31 seq3275 109 4e-20 >seq2801 Length=191572 Score = 147 bits (162), Expect = 2e-31 Identities = 161/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 8939 AGGCTGTGGAGGATCCTGCATTCTGGCACCTCGTGGATGAGGAGAGAGAGAGGCATCTTA 8998 ||||||| | || || ||||||| | | |||||||||||||||||| ||| || | Sbjct 184745 AGGCTGTTGCAGACCCGAGATTCTGGAAGATGGTGGATGAGGAGAGAGAGCTGCACCTCA 184804 Query 8999 TGGGGAGGTGCGCACATTGCGTGTACAACATGATGGGAAAGAGAGAGAAGAAACTGGGAG 9058 ||| |||| | ||| ||||||||| |||||| |||||||| ||||| | | | Sbjct 184805 GGGGTGAGTGCAGGCTATGCTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGG 184864 Query 9059 AGTTTGGAGTGGCAAAAGGCAGCCGGGCCATCTGGTACATGTGGCTGGGGAGTCGCTTTC 9118 |||| || || ||||| || |||| ||||||||||||||||| || || || ||| Sbjct 184865 AGTTCGGCAATGCGAAAGGAAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTT 184924 Query 9119 TAGAGTTTGAGGCCCTCGGATTCCTAAATGAGGA 9152 | || ||||||||||| || |||||||| ||||| Sbjct 184925 TGGAATTTGAGGCCCTGGGCTTCCTAAACGAGGA 184958 >seq3275 Length=417686 Score = 109 bits (120), Expect = 4e-20 Identities = 196/281 (70%), Gaps = 4/281 (1%) Strand=Plus/Plus Query 8939 AGGCTGTGGAGGATCCTGCATTCTGGCACCTCGTGGATGAGGAGAGAGAGAGGCATCTTA 8998 ||||| ||| || ||| ||||||| | | || || ||||| ||||| |||||| | Sbjct 108521 AGGCTTTGGCCGACCCTAGATTCTGGAAGATTGTTGACGAGGAAAGAGAACTGCATCTCA 108580 Query 8999 TGGGGAGG-TGCGCACATTGCGTGTACAACATGATGGGAAAGAGAGAGAAGAAACTGGGA 9057 |||||| || | ||| ||||||| | ||||||||| | |||| || || || Sbjct 108581 -GGGGAGAATGTAGGCTGTGCATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGA 108639 Query 9058 GAGTTTGGAGTGGCAAAAGGCAGCCGGGCCATCTGGTACATGTGGCTGGGGAGTCGCTTT 9117 || ||||| |||||||| ||||| | || |||||||||||| | ||||| || Sbjct 108640 GAATTTGGCAACGCAAAAGGAAGCCGCGTTATTTGGTACATGTGGTTAGGGAGCATATTC 108699 Query 9118 CTAGAGTTTGAGGCCCTCGGATTCCTAAATGAGGACCATTGGGCTTCCAGAGAGTCCAGT 9177 ||||||| |||||||| ||||| | ||||| ||| ||||| ||||| || | Sbjct 108700 TTAGAGTTCGAGGCCCTAGGATTTTTGAATGAAGACGGATGGGCAAAAAGAGAAAACACT 108759 Query 9178 GGAGGAGGAGT-TGAGGGAATAAGCTTAAACTACCTGGGTT 9217 ||| || || | |||| | | | ||||||||||||| Sbjct 108760 GGATTTGGGGTGTCAGGG-CTGGGAGTGAACTACCTGGGTT 108799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34657566918776