Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_027999.1 Length=10761 Score E Sequences producing significant alignments: (Bits) Value seq2801 91.5 1e-14 seq3275 86.0 4e-13 >seq2801 Length=191572 Score = 91.5 bits (100), Expect = 1e-14 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 9078 TGCATATACAACATGATGGGAAAACGAGAGAAAAAACCAGCTGAATTCGGAAAAGCAAAA 9137 ||| | ||||||| |||||| || |||| || || || || ||||| || || ||| Sbjct 184822 TGCTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGGAGTTCGGCAATGCGAAA 184881 Query 9138 GGTAGTAGAGCAATCTGGTACATGTGGTTAGGAGCGCGATTTTTGGAATTCGAAGCTCTT 9197 || ||| | | |||||||||||||||| ||||| || ||||||||||| || || || Sbjct 184882 GGAAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTTTGGAATTTGAGGCCCTG 184941 Query 9198 GGGTTTCTGAATGAAGAT 9215 || || || || || ||| Sbjct 184942 GGCTTCCTAAACGAGGAT 184959 >seq3275 Length=417686 Score = 86.0 bits (94), Expect = 4e-13 Identities = 116/155 (75%), Gaps = 5/155 (3%) Strand=Plus/Plus Query 9063 GGGA-AATGTGAGACT-TGCATATACAACATGATGGGAAAACGAGAGAAAAAACCAGCTG 9120 |||| ||||| || || ||||| ||||| | |||||||| || |||| | ||| | Sbjct 108582 GGGAGAATGT-AGGCTGTGCATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAG 108640 Query 9121 AATTCGGAAAAGCAAAAGGTAGTAGAGCAATCTGGTACATGTGGTTA-GGAGCGCGATTT 9179 |||| || || |||||||| || | | || ||||||||||||||| ||||| ||| Sbjct 108641 AATTTGGCAACGCAAAAGGAAGCCGCGTTATTTGGTACATGTGGTTAGGGAGC-ATATTC 108699 Query 9180 TTGGAATTCGAAGCTCTTGGGTTTCTGAATGAAGA 9214 || || ||||| || || || ||| |||||||||| Sbjct 108700 TTAGAGTTCGAGGCCCTAGGATTTTTGAATGAAGA 108734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34308879933900