Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_029055.1 Length=10290 Score E Sequences producing significant alignments: (Bits) Value seq2801 114 8e-22 seq3275 104 2e-18 >seq2801 Length=191572 Score = 114 bits (126), Expect = 8e-22 Identities = 182/260 (70%), Gaps = 1/260 (0%) Strand=Plus/Plus Query 8854 GCGGTGGTAGATCCTAGGTTTTGGGAGCTCGTTGACAATGAAAGAGAAGCCCATTTGAGA 8913 || || | ||| || || || ||| || | || || | || ||||| || | || Sbjct 184747 GCTGTTGCAGACCCGAGATTCTGGAAGATGGTGGATGAGGAGAGAGAGCTGCACCTCAGG 184806 Query 8914 GGGGAGTGCTTGACCTGTGTCTACAACATGATGGGGAAAAGAGAAAAGAAGCTCGGTGAA 8973 || |||||| | || | ||||||| ||||||||| ||||| ||||||| | | || Sbjct 184807 GGTGAGTGCAGGCTATGCTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGGAG 184866 Query 8974 TTCGGGAAGGCAAAAGGCAGCAGAGCCATTTGGTACATGTGGCTGGGAGCCCGCTTCCTC 9033 ||||| || || ||||| || | | || |||||||||||||| ||| ||| || | Sbjct 184867 TTCGGCAATGCGAAAGGAAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTTTG 184926 Query 9034 GAGTTCGAGGCCCTGGGCTTCCTCAATGAAGACCACTGGTTAAGCAGAGAGAACTCTGGA 9093 || || ||||||||||||||||| || || || ||| || |||||||| | ||| Sbjct 184927 GAATTTGAGGCCCTGGGCTTCCTAAACGAGGATGGATGGGCAAAAAGAGAGAAAACAGGA 184986 Query 9094 GGGGGAGT-TGAGGGCTTGG 9112 ||||| | |||||| || Sbjct 184987 TTTGGAGTGTCAGGGCTGGG 185006 >seq3275 Length=417686 Score = 104 bits (114), Expect = 2e-18 Identities = 179/254 (70%), Gaps = 7/254 (3%) Strand=Plus/Plus Query 8863 GATCCTAGGTTTTGGGAGCTCGTTGACAATGAAAGAGAAGCCCATTTGAGAGGGGAGTGC 8922 || ||||| || ||| || | |||||| | ||||||||| ||| | || || || || Sbjct 108532 GACCCTAGATTCTGGAAGATTGTTGACGAGGAAAGAGAACTGCATCTCAGGGGAGAATGT 108591 Query 8923 TTGACCTGTG--TCTACAACATGATGGGGAAAAGAGAAAAGAAGCTCGGTGAATTCGGGA 8980 | ||||| | ||||| | ||||| || | || | || | | | ||||| || | Sbjct 108592 AGG--CTGTGCATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGGCA 108649 Query 8981 AGGCAAAAGGCAGCAGAGCCATTTGGTACATGTGGCT-GGGAGCCCGCTTCCTCGAGTTC 9039 | |||||||| ||| | | ||||||||||||||| | ||||| | ||| | |||||| Sbjct 108650 ACGCAAAAGGAAGCCGCGTTATTTGGTACATGTGGTTAGGGAG-CATATTCTTAGAGTTC 108708 Query 9040 GAGGCCCTGGGCTTCCTCAATGAAGACCACTGGTTAAGCAGAGAGAACTCTGGAGGGGGA 9099 |||||||| || || | ||||||||| ||| || ||||| ||| ||||| || Sbjct 108709 GAGGCCCTAGGATTTTTGAATGAAGACGGATGGGCAAAAAGAGAAAACACTGGATTTGGG 108768 Query 9100 GT-TGAGGGCTTGG 9112 || | |||||| || Sbjct 108769 GTGTCAGGGCTGGG 108782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32802168283656