Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_030289.1 Length=10206 Score E Sequences producing significant alignments: (Bits) Value seq3275 95.1 8e-16 seq2801 87.8 1e-13 >seq3275 Length=417686 Score = 95.1 bits (104), Expect = 8e-16 Identities = 132/178 (74%), Gaps = 8/178 (4%) Strand=Plus/Plus Query 8806 GAAAGACAGGTCCATCTGGAAGGGAGA-TGTGAGACATGCATTTACAACATGATGGGAAA 8864 |||||| | | ||||| | |||||| ||| | ||||| ||||| | |||||||| Sbjct 108562 GAAAGAGAACTGCATCTC-AGGGGAGAATGTAGGCTGTGCATGTACAATACAATGGGAAA 108620 Query 8865 GAGAGAGAAAAAACCAGCCGAG--TTCGGCAAGGCCAAAGGTAGTAGAGCCATCTGGTAC 8922 | | |||| | ||| ||||| || ||||| || ||||| || | | || |||||| Sbjct 108621 GCGGGAGATGAGACC--CCGAGAATTTGGCAACGCAAAAGGAAGCCGCGTTATTTGGTAC 108678 Query 8923 ATGTGGTT-GGGAGCAAGATTCCTTGAATTTGAAGCCTTGGGATTTTTGAATGAAGAC 8979 |||||||| |||||| | |||| | || || || ||| | |||||||||||||||||| Sbjct 108679 ATGTGGTTAGGGAGC-ATATTCTTAGAGTTCGAGGCCCTAGGATTTTTGAATGAAGAC 108735 >seq2801 Length=191572 Score = 87.8 bits (96), Expect = 1e-13 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 8841 ATGCATTTACAACATGATGGGAAAGAGAGAGAAAAAACCAGCCGAGTTCGGCAAGGCCAA 8900 |||| | ||||||| |||||| |||||||| || || || ||||||||||| || || Sbjct 184821 ATGCTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGGAGTTCGGCAATGCGAA 184880 Query 8901 AGGTAGTAGAGCCATCTGGTACATGTGGTTGGGAGCAAGATTCCTTGAATTTGAAGCCTT 8960 ||| ||| | | ||||||||||||||| | ||| | || | |||||||| ||| | Sbjct 184881 AGGAAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTTTGGAATTTGAGGCCCT 184940 Query 8961 GGGATT 8966 ||| || Sbjct 184941 GGGCTT 184946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32533455377880