Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_030400.1 Length=10122 Score E Sequences producing significant alignments: (Bits) Value seq2801 104 2e-18 >seq2801 Length=191572 Score = 104 bits (114), Expect = 2e-18 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 8676 GTGGGAGGACGTAAAGAGTGCCATCGCTGACCCGAAATTTTGGGATCTTGTTGACCGTGA 8735 ||||||| | | ||| | || | || ||||||| ||| ||| | | || || || Sbjct 184728 GTGGGAGAATGCAAACAAGGCTGTTGCAGACCCGAGATTCTGGAAGATGGTGGATGAGGA 184787 Query 8736 ACGGAAGCTCCATCTCCAGGGTGATTGTGAACTCTGCGTTTACAACACAATGGGTAAAAA 8795 | |||| || ||| |||||| || || ||| | |||||||| ||||| || | Sbjct 184788 GAGAGAGCTGCACCTCAGGGGTGAGTGCAGGCTATGCTTGTACAACACGATGGGGAAGAG 184847 Query 8796 AGAAAAGAAGCCGTCCGCCTTCGGAGCCGCTAAAGG--GTCACGTACCATATGGTACATG 8853 ||| |||||||| | ||||| || ||||| ||| ||| || ||||||||| Sbjct 184848 AGATAAGAAGCCCAGGGAGTTCGGCAATGCGAAAGGAAGTCGGGTA--ATCTGGTACATG 184905 Query 8854 TGGCTCGGAAGCCGGTTTTTGGAATACGAGGCGCTTGGCTTTTTGAACGAGGA 8906 ||||| |||||||| |||||||||| ||||| || ||||| | |||||||| Sbjct 184906 TGGCTAGGAAGCCGTTTTTTGGAATTTGAGGCCCTGGGCTTCCTAAACGAGGA 184958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32264742472104