Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_031138.1 Length=6441 Score E Sequences producing significant alignments: (Bits) Value seq2060 102 3e-18 >seq2060 Length=164512 Score = 102 bits (112), Expect = 3e-18 Identities = 126/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 2755 GAAGGTTGAGTCTCGTGGCTGCATGCACATCTGCCTGTTTAAGAAACCACAACATGGAGG 2814 |||||||||| | || ||||||| || || | || ||||| ||||| | ||||| Sbjct 51935 GAAGGTTGAGCAGCAAGGAGGCATGCATATATGTATATTCAAGAAGTCACAATACGGAGG 51994 Query 2815 GTTGAGAGAGATTTATGTTCTTGGATTTGAGGAACGTGTGGTCCAACTGGTCCTAGAGAC 2874 | |||||||||||||| |||||| | | || || || || ||||| | | ||| Sbjct 51995 TCTAAGAGAGATTTATGTCCTTGGAATCCATGAGCGAGTTGTGCAACTAAGCGTTGAGTG 52054 Query 2875 CATTGCCAGATGCATCTGCAAG-CATTTCCCTTCTGAAACACTGACTAAC 2923 ||| || ||||||||||||||| ||||||||| |||||| |||| ||| Sbjct 52055 CATAGCAAGATGCATCTGCAAGATGTTTCCCTTC-GAAACAATGACCAAC 52103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20489359065420