Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_031327.1 Length=10588 Score E Sequences producing significant alignments: (Bits) Value seq2801 95.1 8e-16 seq3275 87.8 1e-13 >seq2801 Length=191572 Score = 95.1 bits (104), Expect = 8e-16 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 8714 ATTCTGGGAGATGGTTGATAGAGAGAGGCAACTCCATCTCTCGGGAGATTGTGAACTGTG 8773 ||||||| ||||||| ||| ||||| | || || ||| ||| || || || || Sbjct 184764 ATTCTGGAAGATGGTGGATGAGGAGAGAGAGCTGCACCTCAGGGGTGAGTGCAGGCTATG 184823 Query 8774 CGTTTATAACACCATGGGGAAGAAAGAAAAGAAGCCGGCCATCTTAGGCAAAGCGAAGGG 8833 | | || ||||| |||||||||| ||| |||||||| || ||||| ||||| || Sbjct 184824 CTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGGAGTTCGGCAATGCGAAAGG 184883 Query 8834 CTCTCGGACCATTTGGTATATGTGGCTAGGCAGTAGATTCTTGGAGTACGAAGCCCTAGG 8893 |||| || ||||| ||||||||||| || | || ||||| | || ||||| || Sbjct 184884 AAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTTTGGAATTTGAGGCCCTGGG 184943 Query 8894 ATTCTTGAACCAGGA 8908 ||| | ||| |||| Sbjct 184944 CTTCCTAAACGAGGA 184958 >seq3275 Length=417686 Score = 87.8 bits (96), Expect = 1e-13 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 8714 ATTCTGGGAGATGGTTGATAGAGAGAGGCAACTCCATCTCTCGGGAGATTGTGAACTGTG 8773 ||||||| |||| ||||| || || |||| |||||| |||||| ||| ||||| Sbjct 108540 ATTCTGGAAGATTGTTGACGAGGAAAGAGAACTGCATCTCAGGGGAGAATGTAGGCTGTG 108599 Query 8774 CGTTTATAACACCATGGGGAAGAAAGAAAAGA-AGCCGGCCATCTTAGGCAAAGCGAAGG 8832 | | || || || ||||| ||| || | || | || | | || ||||| || || | Sbjct 108600 CATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAGAATTT-GGCAACGCAAAAG 108658 Query 8833 GCTCTCGGACCATTTGGTATATGTGGCTAGGCAGTAGATTCTTGGAGTACGAAGCCCTAG 8892 | || |||||||| |||||| |||| || | |||||| |||| ||| ||||||| Sbjct 108659 GAAGCCGCGTTATTTGGTACATGTGGTTAGGGAGCATATTCTTAGAGTTCGAGGCCCTAG 108718 Query 8893 GATTCTTGAA 8902 |||| ||||| Sbjct 108719 GATTTTTGAA 108728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 33755459306528