Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_032088.1 Length=10864 Score E Sequences producing significant alignments: (Bits) Value seq3275 95.1 8e-16 seq2801 78.8 6e-11 >seq3275 Length=417686 Score = 95.1 bits (104), Expect = 8e-16 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 8892 CCGACCCTCATTTCTGGGACTTAGTCGACGCAGAACGCAAGAAC--CATCTCCAAGGCAA 8949 |||||||| |||||| | | || |||| ||| | ||||| |||||| || | Sbjct 108530 CCGACCCTAGATTCTGGAAGATTGTTGACGAGGAAAG--AGAACTGCATCTCAGGGGAGA 108587 Query 8950 GTGCATGTCGTGTGTGTACAACATGATGGGGAAAAGGGAGAAAAAACAAGGAGAATTCGG 9009 || | | ||| ||||||| | ||||| || |||||| | || ||||||| || Sbjct 108588 ATGTAGGCTGTGCATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGG 108647 Query 9010 GAAAGCGAAAGGTAGTCGTGCCATTTGGTACATGTGGCTAGGGGCTAGGTTCCTAGAGTT 9069 || || ||||| || || | ||||||||||||||| ||||| | ||| ||||||| Sbjct 108648 CAACGCAAAAGGAAGCCGCGTTATTTGGTACATGTGGTTAGGGAGCATATTCTTAGAGTT 108707 Query 9070 CGAAGCTCTCGGCTTTCTTAATGAAGAC 9097 ||| || || || ||| | ||||||||| Sbjct 108708 CGAGGCCCTAGGATTTTTGAATGAAGAC 108735 >seq2801 Length=191572 Score = 78.8 bits (86), Expect = 6e-11 Identities = 145/212 (68%), Gaps = 8/212 (4%) Strand=Plus/Plus Query 8964 TGTACAACATGATGGGGAAAAGGGAGAAAAAACAAGGAGAATTCGGGAAAGCGAAAGGTA 9023 ||||||||| ||||||||| || || || || | | || ||||| || |||||||| | Sbjct 184826 TGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGGAGTTCGGCAATGCGAAAGGAA 184885 Query 9024 GTCGTGCCATTTGGTACATGTGGCTAGGGGCTAGGTTCCTAGAGTTCGAAGCTCTCGGCT 9083 |||| | || ||||||||||||||||| | || | || || || || || |||| Sbjct 184886 GTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTTTGGAATTTGAGGCCCTGGGCT 184945 Query 9084 TTCTTAATGAAGACCACTGGCTGGG----ACGGGAAAATTCAGGAGGAGGCGTCGAAGGC 9139 | || || || || ||| |||| | | || || ||||| || || ||| Sbjct 184946 TCCTAAACGAGGA----TGGATGGGCAAAAAGAGAGAAAACAGGATTTGGAGTGTCAGGG 185001 Query 9140 CTGGGGCTGCAGAGACTCGGGTATGTGCTTGA 9171 ||||| || | || || ||||||||||| Sbjct 185002 CTGGGAGTGAATTATCTAGGATATGTGCTTGA 185033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34638373139792