Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_033693.1 Length=10173 Score E Sequences producing significant alignments: (Bits) Value seq2801 150 1e-32 seq3275 125 5e-25 >seq2801 Length=191572 Score = 150 bits (166), Expect = 1e-32 Identities = 156/204 (76%), Gaps = 8/204 (4%) Strand=Plus/Plus Query 8815 TACAACATGATGGGGAAAAGAGAGAAGAAACCCTCAGAGTTTGGGAAAGCAAAAGGAAGC 8874 ||||||| ||||||||| ||||| ||||| ||| ||||| || || || |||||||| Sbjct 184828 TACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGGAGTTCGGCAATGCGAAAGGAAGT 184887 Query 8875 CGGGCTATCTGGTACATGTGGCTAGGAGCCCGGTTTCTGGAATTTGAGGCCCTCGGATTT 8934 |||| ||||||||||||||||||||| ||| ||| |||||||||||||||| || || Sbjct 184888 CGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTTTGGAATTTGAGGCCCTGGGCTTC 184947 Query 8935 CTGAACGAGGACCATTGGATGAGC----AGAAAGAACTCTGGATCAGGAGTCGAGGGTCT 8990 || |||||||| |||||| || ||| |||| | |||| ||||| || || Sbjct 184948 CTAAACGAGGA----TGGATGGGCAAAAAGAGAGAAAACAGGATTTGGAGTGTCAGGGCT 185003 Query 8991 TGGACTGCAATACCTAGGTTATGT 9014 ||| || | || ||||| ||||| Sbjct 185004 GGGAGTGAATTATCTAGGATATGT 185027 >seq3275 Length=417686 Score = 125 bits (138), Expect = 5e-25 Identities = 201/288 (70%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 8732 AGGCTGTGAAAGATCCTAGATTTTGGAGCCTGGTAGACAAAGAAAGGCAATGCCATCTGG 8791 ||||| || || |||||||| |||| | || ||| | ||||| || ||||| Sbjct 108521 AGGCTTTGGCCGACCCTAGATTCTGGAAGATTGTTGACGAGGAAAGAGAACTGCATCTCA 108580 Query 8792 AAGGAAAATGCAGAACATGTATCTACAACATGATGGGGAAAAGAGAGAAGAAACCCTCAG 8851 ||| |||| || || || ||||| | ||||| || | |||| || |||| || Sbjct 108581 GGGGAGAATGTAGGCTGTGCATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAG 108640 Query 8852 AGTTTGGGAAAGCAAAAGGAAGCCGGGCTATCTGGTACATGTGGCTAGGAGCCCGGTTTC 8911 | ||||| || |||||||||||||| | ||| |||||||||||| |||| | || Sbjct 108641 AATTTGGCAACGCAAAAGGAAGCCGCGTTATTTGGTACATGTGGTTAGGGAGCATATTCT 108700 Query 8912 TGGAATTTGAGGCCCTCGGATTTCTGAACGAGGACCATTGGATGAGCAGAAAG----AAC 8967 | || || |||||||| |||||| |||| || ||| ||||| ||| |||| ||| Sbjct 108701 TAGAGTTCGAGGCCCTAGGATTTTTGAATGAAGAC----GGATGGGCAAAAAGAGAAAAC 108756 Query 8968 TCTGGATCAGGAGTCGAGGGTCTTGGACTGCAATACCTAGGTTATGTC 9015 |||||| || || || || ||| || | ||||| ||||||||| Sbjct 108757 ACTGGATTTGGGGTGTCAGGGCTGGGAGTGAACTACCTGGGTTATGTC 108804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32427889593468