Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_033694.1 Length=10095 Score E Sequences producing significant alignments: (Bits) Value seq2801 105 4e-19 >seq2801 Length=191572 Score = 105 bits (116), Expect = 4e-19 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 8668 GCTTTGGCAGATCAACGATTCTGGGACATGGTAGATAACGAGAGGGCCTTACACTTGCGT 8727 ||| | ||||| | |||||||| | ||||| ||| | ||||| | | ||| | | Sbjct 184747 GCTGTTGCAGACCCGAGATTCTGGAAGATGGTGGATGAGGAGAGAGAGCTGCACCTCAGG 184806 Query 8728 GGTGACTGTGAGCTTTGCATCTATAACACGATGGGAAAGAAAGAAAAGAAGCCATCTGCC 8787 ||||| || ||| ||| | || ||||||||||| |||| ||| |||||||| | Sbjct 184807 GGTGAGTGCAGGCTATGCTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGGAG 184866 Query 8788 TTTGGCACTGCGAAAGGTTCACGCACCATCTGGTATATGTGGCTGGGTAGCCGTTATTTA 8847 || |||| ||||||||| || |||||||| |||||||| || ||||||| ||| Sbjct 184867 TTCGGCAATGCGAAAGGAAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTTTG 184926 Query 8848 GAGTACGAGGCTTTAGGATTCTTGAACGAAGAT 8880 || | ||||| | || ||| | ||||| ||| Sbjct 184927 GAATTTGAGGCCCTGGGCTTCCTAAACGAGGAT 184959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32178370466676