Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_033698.1 Length=10182 Score E Sequences producing significant alignments: (Bits) Value seq2801 141 6e-30 seq3275 104 2e-18 >seq2801 Length=191572 Score = 141 bits (156), Expect = 6e-30 Identities = 174/235 (74%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 8738 AGGCCGTGGCAGACCCTAGGTTCTGGCGCTTGGTGGACAGAGAACGTCAAGCT-CACTTG 8796 |||| || |||||||| || |||||| ||||||| ||| | |||| ||| | Sbjct 184745 AGGCTGTTGCAGACCCGAGATTCTGGAAGATGGTGGAT-GAGGAGAGAGAGCTGCACCTC 184803 Query 8797 GAAGGCCGGTGCGAGACATGCATCTACAATATGATGGGGAAGCGTGAGAAGAAGCCCTCA 8856 || |||| | |||| | ||||| | |||||||||| | || ||||||||| Sbjct 184804 AGGGGTGAGTGCAGGCTATGCTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGG 184863 Query 8857 GAGTTTGGAAAGGCCAAAGGAAGCCGAGCTATCTGGTACATGTGGCTAGGAGCCCGATTT 8916 ||||| || || || |||||||| || | ||||||||||||||||||||| ||| ||| Sbjct 184864 GAGTTCGGCAATGCGAAAGGAAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTT 184923 Query 8917 TTGGAATTTGAGGCTCTGGGCTTCCTGAATGAAGATCACTGGTTGGGGAGAAAGA 8971 |||||||||||||| ||||||||||| || || || ||| |||| | ||||| Sbjct 184924 TTGGAATTTGAGGCCCTGGGCTTCCTAAACGAGGA----TGGATGGGCAAAAAGA 184974 >seq3275 Length=417686 Score = 104 bits (114), Expect = 2e-18 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 8815 TGCATCTACAATATGATGGGGAAGCGTGAGAAGAAGCCCTCAGAGTTTGGAAAGGCCAAA 8874 ||||| ||||||| ||||| ||||| |||| || ||| ||| ||||| || || ||| Sbjct 108598 TGCATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGGCAACGCAAAA 108657 Query 8875 GGAAGCCGAGCTATCTGGTACATGTGGCTAGGAGCCCGATTTTTGGAATTTGAGGCTCTG 8934 |||||||| | ||| |||||||||||| |||| | ||| || || || ||||| || Sbjct 108658 GGAAGCCGCGTTATTTGGTACATGTGGTTAGGGAGCATATTCTTAGAGTTCGAGGCCCTA 108717 Query 8935 GGCTTCCTGAATGAAGA 8951 || || |||||||||| Sbjct 108718 GGATTTTTGAATGAAGA 108734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32456680261944